Multistate and Multicomponent Species Proposal
Contents |
Proposal title
Multistate and Multicomponent Species (abbrevation multi)
The last version of the proposal is the PDF document.
Proposal authors
Editors
The document summarizing the discussions and describing the proposed package is written by:
| Nicolas Le Novère European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK Email: lenov at ebi.ac.uk | Anika Oellrich European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK Email: anika at ebi.ac.uk |
Contributors
The following individuals contributed to the discussions and the content of the package:
| Nicolas Le Novère European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK Email: lenov at ebi.ac.uk | Anika Oellrich European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK Email: anika at ebi.ac.uk |
| Martin Meier-Schellersheim National Institute of Allergy and Infectious Diseases National Institutes of Health Building 10, Room 11N311 10 Center Drive, MSC 1892 Bethesda, MD 20892-1892, USA Email: mms at niaid.nih.gov | Bin Hu Theoretical Division Los Alamos National Laboratory Los Alamos, NM 87545 |
| William S. Hlavacek Theoretical Division Los Alamos National Laboratory | James Faeder 3082 Biomedical Science Tower 3 University of Pittsburgh School of Medicine |
| Michael Blinov Department of Genetics & Developmental Biology University of Connecticut Health Center 263 Farmington Avenue, Farmington, CT 06030-3301 Email: blinov at uchc.edu | Nicolas Rodriguez European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, UK Email: rodrigue@ebi.ac.uk |
| Stefan Hoops Virginia Bioinformatics Institute - 0477 Virginia Tech Bioinformatics Facility I | Andrew Finney University Hertfordshire, Hatfield AL10 9AB, Herts, England. Email: a.finney@herts.ac.uk |
Proposal tracking number
Number 2430531 in the SBML issue tracking system.
Version information
Version number and date of public release
Version X released on DD Month YYYY.
URL for this version of the proposal
http://sbml.org/Community/Wiki/SBML_Level_3_Proposals/ Multistate_Multicomponent_Species_%28Le_Novere_and_Oellrich_2007%29
URL for the previous version of this proposal
Table of Content
- Introduction
- Syntax and semantics
- Extension to the model element
- Definition of the species types and their state features
- Definition of filters to select states and topologies
- Definition of the instances and pools of instances
- Computing initial values for pools of instances
- Rules
- Definition of reactions and reaction rules
- Assignments following discrete events
- Complete examples
- References
Package dependencies
The package as proposed here does not depend on any other SBML Level 3 packages.