2009 SBML Hackathon Wiki

Test suite materials

Use this link to the SF.net download page for the test cases. Get the latest version of the file named "sbml-test-cases-YYYY-MM-DD.zip".

Use this link to get the jar file for a simple test runner written by Kimberley Begley. The usage is

java -jar cmd-line-runner.jar results-directory cases-directory where the directories are as follows:

• results-directory is the directory containing your simulation result files. It must be a flat directory containing files named "00001.csv", "00002.csv", etc.

• cases-directory is the path to cases/semantic directory that you downloaded from SF.net. (Note: you have to supply the path to the /semantic directory. So for example, if you unpack the cases zip file to /tmp on your system, the path would be /tmp/cases/semantic.)