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Other Materials

Contents

Proposed SBML extension for logical models and Petri-net

Existing File formats

Logical models

  • GINML - the GINsim's format

Petri nets

Petri Net Markup Language (PNML)

Pi-calculus

Websites

Logical models

Petri nets

Pi-Calculus

  • BIOSPI
  • SPiM
  • C Kuttler, J Niehren, R Blossey. Gene regulation in the pi calculus: Simulating cooperativity at the lambda switch. Transactions on Computational Systems Biology VII, 2006 - Springer. Kuttler_TCSB_2006.pdf

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