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The 10th SBML Forum Meeting

The Conference Center at Harvard Medical
October 23–24, 2005

The tenth workshop was held at The Conference Center at Harvard Medical in Boston, Massachusetts as a satellite workshop of ICSB 2005. This page contains the program and links to presentation materials and other documentation from the workshop.


List of attendees


Announcement page

We thank our generous sponsors for financial support of the meeting:

The rest of this page contains the meeting agenda and links to people's presentation materials.

Day 1 (Sunday, October 23)

Time Speaker(s) Title
09:00–09:30 Mike Hucka Intro, overview & SBML update
09:25–09:40 Ben Bornstein LibSBML update
09:40–09:50 Sarah Keating SBMLToolbox update
09:50–10:00 Bruce Shapiro MathSBML update
10:00–10:10 Maria Schilstra CellML2SBML update
10:10–10:25 Break
10:25–10:35 Akira Funahashi CellDesigner 3
10:35–10:50 Yasunori Osana CellDesigner Layout Annot. Converter
10:50–11:05 Yow Iwaoka ReCSIP
11:05–11:25 Frank Bergmann SBML Render Extension
11:25–11:30 Sven Sahle Note about the SBML Layout Extension
11:30–11:45 Mats Jirstrand PathwayLab
11:45–12:00 Wolfram Liebermeister SBMLmerge
12:00–12:20 Darren Wilkinson DSMTS
12:20–13:40 Lunch
13:40–13:50 Mike Hucka BioModels.net
13:50–14:05 Nicolas Le Novère MIRIAM
14:05–14:25 Nicolas Le Novère BioModels Database
14:25–14:40 Mike Hucka Brief Overview of SBO
14:40–14:50 Nicolas Le Novère Making SBO a Reality
14:50–15:00 Additional Discussion Time
15:00–15:15 Break
15:15–15:45 Hiroaki Kitano SBGN
15:45–16:30 Andrew Finney Summary of the Level 2 Ver. 2 Draft
16:30–17:30 Mike Hucka Restructuring the SBML Process
17:30 Adjourn for the day

Day 2 (Monday, October 24)

Time Speaker(s) Title
09:00–09:05 Mike Hucka Orientation to the day
09:05–09:20 Zheng Li SBML Support in TDS
09:35–09:50 Tomas Radivoyevitch SBMLR [demoR.r] [demoSBMLR.r]
09:50–10:05 Henning Schmidt SBML Enabled Software: A User's Perspective
10:05–10:15 Nicolas Rodriguez SBML Editor
10:15–10:30 Break
10:30–10:50 Jeremy Zucker BioPAX/SBML Integration
10:50–11:10 Discussion of BioPAX + SBML
12:15–13:30 Lunch
13:30–15:00 Andrew Finney SBML Level 2 Version 2 Draft
15:00–15:15 Break
15:15–16:00 Continuing discussions about L2v2
16:00–17:00 Mike Hucka The SBML Process
17:00–17:15 Mike Hucka Next Year's Meetings
17:15–17:30 Closing Remarks
17:30 Adjourn
18:00 Dinner

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