The 10th SBML Forum Meeting
The Conference Center at Harvard Medical
October 23–24, 2005
The tenth workshop was held at The Conference Center at Harvard Medical in Boston, Massachusetts as a satellite workshop of ICSB 2005. This page contains the program and links to presentation materials and other documentation from the workshop.
We thank our generous sponsors for financial support of the meeting:
- The National Institute of General Medical Sciences (NIGMS), USA (grant R13 GM072439)
- The Biological Network Modeling Center (BNMC) at the Beckman Institute of Caltech
The rest of this page contains the meeting agenda and links to people's presentation materials.
Day 1 (Sunday, October 23)
| Time | Speaker(s) | Title |
|---|---|---|
| 09:00–09:30 | Mike Hucka | Intro, overview & SBML update |
| 09:25–09:40 | Ben Bornstein | LibSBML update |
| 09:40–09:50 | Sarah Keating | SBMLToolbox update |
| 09:50–10:00 | Bruce Shapiro | MathSBML update |
| 10:00–10:10 | Maria Schilstra | CellML2SBML update |
| 10:10–10:25 | Break | |
| 10:25–10:35 | Akira Funahashi | CellDesigner 3 |
| 10:35–10:50 | Yasunori Osana | CellDesigner Layout Annot. Converter |
| 10:50–11:05 | Yow Iwaoka | ReCSIP |
| 11:05–11:25 | Frank Bergmann | SBML Render Extension |
| 11:25–11:30 | Sven Sahle | Note about the SBML Layout Extension |
| 11:30–11:45 | Mats Jirstrand | PathwayLab |
| 11:45–12:00 | Wolfram Liebermeister | SBMLmerge |
| 12:00–12:20 | Darren Wilkinson | DSMTS |
| 12:20–13:40 | Lunch | |
| 13:40–13:50 | Mike Hucka | BioModels.net |
| 13:50–14:05 | Nicolas Le Novère | MIRIAM |
| 14:05–14:25 | Nicolas Le Novère | BioModels Database |
| 14:25–14:40 | Mike Hucka | Brief Overview of SBO |
| 14:40–14:50 | Nicolas Le Novère | Making SBO a Reality |
| 14:50–15:00 | Additional Discussion Time | |
| 15:00–15:15 | Break | |
| 15:15–15:45 | Hiroaki Kitano | SBGN |
| 15:45–16:30 | Andrew Finney | Summary of the Level 2 Ver. 2 Draft |
| 16:30–17:30 | Mike Hucka | Restructuring the SBML Process |
| 17:30 | Adjourn for the day |
Day 2 (Monday, October 24)
| Time | Speaker(s) | Title |
|---|---|---|
| 09:00–09:05 | Mike Hucka | Orientation to the day |
| 09:05–09:20 | Zheng Li | SBML Support in TDS |
| 09:35–09:50 | Tomas Radivoyevitch | SBMLR [demoR.r] [demoSBMLR.r] |
| 09:50–10:05 | Henning Schmidt | SBML Enabled Software: A User's Perspective |
| 10:05–10:15 | Nicolas Rodriguez | SBML Editor |
| 10:15–10:30 | Break | |
| 10:30–10:50 | Jeremy Zucker | BioPAX/SBML Integration |
| 10:50–11:10 | Discussion of BioPAX + SBML | |
| 12:15–13:30 | Lunch | |
| 13:30–15:00 | Andrew Finney | SBML Level 2 Version 2 Draft |
| 15:00–15:15 | Break | |
| 15:15–16:00 | Continuing discussions about L2v2 | |
| 16:00–17:00 | Mike Hucka | The SBML Process |
| 17:00–17:15 | Mike Hucka | Next Year's Meetings |
| 17:15–17:30 | Closing Remarks | |
| 17:30 | Adjourn | |
| 18:00 | Dinner |