The 3rd Workshop on Software Platforms for Systems Biology
California Institute of Technology, Pasadena, California, USA
June 1–2, 2001
The 3rd workshop was held on the campus of the California Institute of Technology in Pasadena. It was organized by the Caltech ERATO Kitano group and supported by the ERATO Kitano Symbiotic Systems Project.
The following are the slides from individual presentations at the workshop. This page contains only the presentation materials from collaborating groups for the first day of the workshop. The second day consisted of presentations by the Caltech ERATO Kitano group and group discussions.
| Speaker(s) | Time | Title |
|---|---|---|
| Hamid Bolouri | 08:45–09:00 | The Day's Agenda |
| Warren Hedley | 09:00–09:45 | Metadata Tutorial (discussion proposal available here) |
| Warren Hedley | 09:45–10:30 | CellML 1.0 Specification Summary, CellML Future, CellML ↔ SBML Translation |
| Break | 10:30–11:00 | |
| Daniel Lucio | 11:00–11:45 | Geometry Description Standards? |
| Eric Mjolsness | 11:45–12:30 | XML for Multicellularity, Arrays and Interconnects (supporting article available here) |
| Lunch | 12:30–14:00 | |
| Martin Ginkel and Jörg Stelling | 14:00–14:45 | XML Notation for Modularity (with example SBML Level 2 and pre-meeting proposal) |
| Nicolas Le Novère | 14:45–15:15 | Multistate Proteins |
| Break | 15:00–15:30 | |
| Kouichi Takahashi | 15:30–16:15 | Mixed Mode and Large-Scale Simulation Issues |
| Igor Goryanin and Hugh Spence | 16:15–17:00 | XML Standards for Databases |
Additional materials: Andrew Finney had previously written a proposal for extensions to SBML that was the basis of much of the discussions at the workshop.