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The 7th SBML Forum Meeting

Ft. Lauderdale, Florida, USA
May 11–12, 2003

The seventh workshop was held during two days at the Sheraton Fort Lauderdale Airport, on May 11-12. We chose this time and location to coincide with the DARPA BioSPICE PI Meeting to enable members of the BioSPICE Model Definition Language (MDL) group to easily attend the workshop. (The BioSPICE MDL group has been an active participant in SBML use and development.)

This page contains the program and links to presentation materials and other documentation from the workshop. We also distributed a printed booklet at the meeting; this booklet is available online in PDF form only. We regret we have no printed copies left.

Photos are thanks to Maria Schilstra, Hugh Spence and Avis Cowley.


Supplementary Materials


Photo Album

Day 1 (Sunday, May 11)

Time Speaker(s) Title
08:30–09:00 Continental breakfast in room Citrus 1
09:00–09:05 Mike Hucka & Andrew Finney Introduction and Overview of the Day's Agenda
09:05–09:15 Takeshi Sakurada Current Status of E–CELL3 and SBML Support
09:15–09:20 Discussion
09:20–09:30 Akira Funahashi CellDesigner (formerly SBEdit)
09:30–09:35 Discussion
09:35–09:50 Poul Nielsen CellML Evolution
09:50–09:55 Discussion
09:55–10:10 Marc Vass The JigCell SBML Java Parser Library (additional materials: tutorial handout)
10:10–10:15 Discussion
10:15–10:35 Coffee, teas, and fruit juices
10:35–11:05 Ben Bornstein libsbml Tutorial
11:05–11:15 Discussion
11:15–11:20 Mike Hucka (for Bruce Shapiro) The MathSBML Mathematica Package
11:20–12:00 Marc Vass, Maria Schilstra SBML Experiences in the Field (Vass)
12:00–13:45 Lunch (on your own)
13:45–14:00 Andrew Finney & Mike Hucka Developing a Best Practices Guide
14:00–15:00 Discussion
15:00–15:20 Coffee, tea, and the finest snacks we can afford
15:20–16:20 General Discussion: Finalizing SBML Level 2
16:20–16:45 General Discussion: Organizing a Paper on SBML Level 2
16:45–17:00 General Discussion: Agenda for Second Day/SBML Level 3
17:00 Adjourn for the day

Day 2 (Monday, May 12)

Time Speaker(s) Title
08:30–09:00 Continental breakfast in room Citrus 1
09:00–09:05 Mike Hucka & Andrew Finney Overview of the Day's Agenda
09:05–10:00 lead by Mike Hucka & Andrew Finney Organizing the SBML Standardization Process
10:00–10:30 General Discussion: Relationships to OMG and I3C
10:30–10:50 Coffee, teas, and fruit juices again
10:50–11:05 Eric Mjolsness The Need for Arrays in SBML
11:05–11:15 Discussion
11:15–11:30 Andrew Finney A Proposed Form for SBML Level 3 Arrays
11:30–11:40 Discussion
11:40–12:00 Presentations on SBML Level 3 Features
12:00–13:30 Lunch (on your own)
13:30–15:00 SBML Level 3 Discussions
15:00–15:20 Coffee, tea, and the last of the snacks
15:20–17:00 SBML Level 3 Discussions
17:00 Adjourn

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