The 7th SBML Forum Meeting
Ft. Lauderdale, Florida, USA
May 11–12, 2003
The seventh workshop was held during two days at the Sheraton Fort Lauderdale Airport, on May 11-12. We chose this time and location to coincide with the DARPA BioSPICE PI Meeting to enable members of the BioSPICE Model Definition Language (MDL) group to easily attend the workshop. (The BioSPICE MDL group has been an active participant in SBML use and development.)
This page contains the program and links to presentation materials and other documentation from the workshop. We also distributed a printed booklet at the meeting; this booklet is available online in PDF form only. We regret we have no printed copies left.
Photos are thanks to Maria Schilstra, Hugh Spence and Avis Cowley.
Day 1 (Sunday, May 11)
| Time | Speaker(s) | Title |
|---|---|---|
| 08:30–09:00 | Continental breakfast in room Citrus 1 | |
| 09:00–09:05 | Mike Hucka & Andrew Finney | Introduction and Overview of the Day's Agenda |
| 09:05–09:15 | Takeshi Sakurada | Current Status of E–CELL3 and SBML Support |
| 09:15–09:20 | Discussion | |
| 09:20–09:30 | Akira Funahashi | CellDesigner (formerly SBEdit) |
| 09:30–09:35 | Discussion | |
| 09:35–09:50 | Poul Nielsen | CellML Evolution |
| 09:50–09:55 | Discussion | |
| 09:55–10:10 | Marc Vass | The JigCell SBML Java Parser Library (additional materials: tutorial handout) |
| 10:10–10:15 | Discussion | |
| 10:15–10:35 | Coffee, teas, and fruit juices | |
| 10:35–11:05 | Ben Bornstein | libsbml Tutorial |
| 11:05–11:15 | Discussion | |
| 11:15–11:20 | Mike Hucka (for Bruce Shapiro) | The MathSBML Mathematica Package |
| 11:20–12:00 | Marc Vass, Maria Schilstra | SBML Experiences in the Field (Vass) |
| 12:00–13:45 | Lunch (on your own) | |
| 13:45–14:00 | Andrew Finney & Mike Hucka | Developing a Best Practices Guide |
| 14:00–15:00 | Discussion | |
| 15:00–15:20 | Coffee, tea, and the finest snacks we can afford | |
| 15:20–16:20 | General Discussion: Finalizing SBML Level 2 | |
| 16:20–16:45 | General Discussion: Organizing a Paper on SBML Level 2 | |
| 16:45–17:00 | General Discussion: Agenda for Second Day/SBML Level 3 | |
| 17:00 | Adjourn for the day |
Day 2 (Monday, May 12)
| Time | Speaker(s) | Title |
|---|---|---|
| 08:30–09:00 | Continental breakfast in room Citrus 1 | |
| 09:00–09:05 | Mike Hucka & Andrew Finney | Overview of the Day's Agenda |
| 09:05–10:00 | lead by Mike Hucka & Andrew Finney | Organizing the SBML Standardization Process |
| 10:00–10:30 | General Discussion: Relationships to OMG and I3C | |
| 10:30–10:50 | Coffee, teas, and fruit juices again | |
| 10:50–11:05 | Eric Mjolsness | The Need for Arrays in SBML |
| 11:05–11:15 | Discussion | |
| 11:15–11:30 | Andrew Finney | A Proposed Form for SBML Level 3 Arrays |
| 11:30–11:40 | Discussion | |
| 11:40–12:00 | Presentations on SBML Level 3 Features | |
| 12:00–13:30 | Lunch (on your own) | |
| 13:30–15:00 | SBML Level 3 Discussions | |
| 15:00–15:20 | Coffee, tea, and the last of the snacks | |
| 15:20–17:00 | SBML Level 3 Discussions | |
| 17:00 | Adjourn |