Error Categories

 
 


Internal errors

Operating system errors

XML errors

General SBML consistency

Identifier consistency

Unit consistency

MathML consistency

SBO consistency

Overdetermined analysis

Modelling practice recommendations



This page lists all error, warning and informational
diagnostic codes and messages produced by libSBML, the software underlying
the Online SBML Validator.  The diagnostics whose code numbers are between
10000 and 90000 are defined in the SBML specification documents; the ones
with numbers below 10000 and above 90000 are specific to libSBML and are
not defined by SBML.

 Internal error
This class of errors indicates a problem involving the libSBML
software itself or the underlying XML parser.  This almost
certainly indicates a software defect (i.e., bug) in libSBML.
Please report
occurrences of this to the libSBML developers.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
00000
		
Unknown error
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
	
	

		
00101
		
Internal XML parser error
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
	
	

		
00102
		
Unrecognized XML parser code
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
	
	

		
00103
		
Transcoder error
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
	



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 Operating system
A problem reported by the operating system, such
as an inability to read or write a file.  This  
indicates something that is not a program error but is outside of the control of libSBML.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
00001
		
Out of memory
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
		
Fatal
	
	

		
00002
		
File unreadable
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
00003
		
File unwritable
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
00004
		
File operation error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
00005
		
Network access error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	



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 XML Error
A problem in the XML content itself.  This
usually arises from malformed XML or the use of  
constructs not permitted in SBML.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
01001
		
Missing XML declaration
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01002
		
Missing XML encoding attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01003
		
Bad XML declaration
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01004
		
Bad XML DOCTYPE
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01005
		
Invalid character
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01006
		
Badly formed XML
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01007
		
Unclosed token
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01008
		
Invalid XML construct
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01009
		
XML tag mismatch
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01010
		
Duplicate attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01011
		
Undefined XML entity
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01012
		
Bad XML processing instruction
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01013
		
Bad XML prefix
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01014
		
Bad XML prefix value
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01015
		
Missing required attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01016
		
Attribute type mismatch
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01017
		
Bad UTF8 content
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01018
		
Missing attribute value
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01019
		
Bad attribute value
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01020
		
Bad XML attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01021
		
Unrecognized XML element
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01022
		
Bad XML comment
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01023
		
Bad XML declaration location
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01024
		
Unexpected EOF
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01025
		
Bad XML ID value
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01026
		
Bad XML IDREF
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01027
		
Uninterpretable XML content
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01028
		
Bad XML document structure
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01029
		
Invalid content after XML content
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01030
		
Expected quoted string
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01031
		
Empty value not permitted
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01032
		
Bad number
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01033
		
Colon character not permitted
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01034
		
Missing XML elements
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
01035
		
Empty XML content
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	



Back to Category list

General SBML consistency
Category of errors that can occur while validating general SBML constructs.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10101
		
Not UTF8
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10102
		
Unrecognized element
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10103
		
Not conformant to SBML XML schema
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10104
		
Not conformant to SBML XML schema
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
10401
		
Missing declaration of XML namespace for annotation
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10402
		
Multiple annotations using same XML namespace
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10403
		
Invalid use of SBML XML namespace in annotation
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
10404
		
Multiple annotation elements not allowed
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
10801
		
Notes not placed in XHTML namespace
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10802
		
XML declarations not permitted in notes
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10803
		
XML DOCTYPE not permitted in notes
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10804
		
Invalid notes content
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
10805
		
Only one notes element allowed.
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20101
		
Invalid XML namespace for SBML container
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20102
		
Missing or inconsistent value for 'level' attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20103
		
Missing or inconsistent value for 'version' attribute
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20104
		
Invalid level/version on package namespace
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20105
		
'level' must be positive integer
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20106
		
'version' must be positive integer
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20108
		
Invalid attribute on <sbml>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20201
		
Missing model
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20202
		
Incorrect ordering of components in model definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20203
		
A given listOf___, if present, cannot be empty
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20204
		
Missing compartment in species definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20205
		
Only one of each ListOf element allowed
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20206
		
Only FunctionDefinitions allowed in ListOfFunctionDefinitions
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20207
		
Only UnitDefinitions allowed in ListOfUnitDefinitions
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20208
		
Only Compartments allowed in ListOfCompartments
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20209
		
Only Species allowed in ListOfSpecies
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20210
		
Only parameters allowed in ListOfParameters
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20211
		
Only InitialAssignments allowed in ListOfInitialAssignments
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20212
		
Only Rules allowed in ListOfRules
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20213
		
Only Constraints allowed in ListOfConstraints
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20214
		
Only Reactions allowed in ListOfReactions
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20215
		
Only Events allowed in ListOfEvents
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20216
		
ConversionFactor must be parameter
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20217
		
Invalid value of 'timeUnits' on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20218
		
Invalid value of 'volumeUnits' on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20219
		
Invalid value of 'areaUnits' on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20220
		
Invalid value of 'lengthUnits' on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20221
		
Invalid value of 'extentUnits' on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20222
		
Invalid attribute on <model>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20223
		
Invalid attribute on <listOfFunctionDefinitions>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20224
		
Invalid attribute on <listOfUnitDefinitions>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20225
		
Invalid attribute on <listOfCompartments>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20226
		
Invalid attribute on <listOfSpecies>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20227
		
Invalid attribute on <listOfParameters>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20228
		
Invalid attribute on <listOfInitialAssignments>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20229
		
Invalid attribute on <listOfRules>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20230
		
Invalid attribute on <listOfConstraints>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20231
		
Invalid attribute on <listOfReactions>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20232
		
Invalid attribute on <listOfEvents>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20301
		
Invalid expression in function definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20302
		
Invalid forward reference in <apply><ci>...</ci></apply> value
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
		
N/A
	
	

		
20303
		
Recursive function definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20304
		
Unknown <ci> reference in <lambda>
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20305
		
Function return type must be either numerical or boolean
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20306
		
FunctionDefinition must contain one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20307
		
FunctionDefinition must have id and optionally metaid and sboTerm
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20401
		
Invalid 'id' value for unit definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20402
		
Invalid redefinition of 'substance'
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20403
		
Invalid redefinition of 'length'
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20404
		
Invalid redefinition of 'area'
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20405
		
Invalid redefinition of 'time'
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20406
		
Invalid redefinition of 'volume'
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20407
		
Must use 'exponent'=1 when defining 'volume' in terms of litres
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
		
N/A
	
	

		
20408
		
Must use 'exponent'=3 when defining 'volume' in terms of metres
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
		
N/A
	
	

		
20409
		
Empty list of units not permitted
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20410
		
Invalid value of 'kind' in unit definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20411
		
'offset' not supported in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
20412
		
'Celsius' not defined in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
20413
		
ListOfUnits must not be empty
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20414
		
Only one ListOfUnits element on UnitDefinition
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20415
		
Only Units allowed in ListOfUnits
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20419
		
Invalid attribute on <unitDefinition>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20420
		
Invalid attribute on <listOfUnits>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20421
		
Invalid attribute on <unit>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20501
		
Use of 'size' is invalid for a zero-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20502
		
Use of 'units' is invalid for a zero-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20503
		
Zero-dimensional compartments cannot be non-constant
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20504
		
Undefined compartment used as 'outside' value
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20505
		
Recursive nesting of compartments via 'outside'
		
Warning
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
N/A
	
	

		
20506
		
Invalid nesting of zero-dimensional compartments
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
N/A
	
	

		
20507
		
Invalid value of 'units' for a one-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Warning
	
	

		
20508
		
Invalid value of 'units' for a two-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Warning
	
	

		
20509
		
Invalid value of 'units' for a three-dimensional compartment
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
	
	

		
20510
		
Invalid 'compartmentType' reference
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
20517
		
Invalid attribute on <compartment>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20601
		
Invalid 'compartment' reference
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20602
		
No 'spatialSizeUnits' permitted if 'hasOnlySubstanceUnits'='true'
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
20603
		
No 'spatialSizeUnits' permitted if compartment is zero-dimensional
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
20604
		
No 'initialConcentration' permitted if compartment is zero-dimensional
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
20605
		
Invalid value of 'spatialSizeUnits' for a one-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
20606
		
Invalid value of 'spatialSizeUnits' for a two-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
20607
		
Invalid value of 'spatialSizeUnits' for a three-dimensional compartment
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
20608
		
Invalid value of 'units'
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
	
	

		
20609
		
Cannot set both 'initialConcentration' and 'initialAmount'
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20610
		
Cannot use non-boundary species in both reactions and rules simultaneously
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20611
		
Cannot use non-boundary, constant species as reactant or product
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20612
		
Invalid 'speciesType' reference
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
20613
		
Cannot have multiple species of the same type in the same compartment
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
20614
		
Missing 'compartment' value for species
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20615
		
Attribute 'spatialSizeUnits' not supported in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
N/A
	
	

		
20617
		
Invalid conversionFactor attribute
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20623
		
Invalid attribute on <species>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20701
		
Invalid value for 'units' in parameter definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20705
		
ConversionFactor must be constant parameter
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20706
		
Invalid attribute on parameter
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20801
		
Invalid 'symbol' reference in initial assignment
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
20802
		
Multiple initial assignments for the same 'symbol' value
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
20803
		
Cannot set a value with both initial assignments and assignment rules simultaneously
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
20804
		
InitialAssignment must contain one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20805
		
Invalid attribute on initialAssignment
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20901
		
Invalid 'variable' reference in assignment rule
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20902
		
Invalid 'variable' reference in rate rule
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20903
		
Cannot reassign a constant in an assignment rule
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20904
		
Cannot reassign a constant in a rate rule
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
20905
		


		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
20906
		
Circular dependency involving rules and reactions
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
20907
		
Rule must contain one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20908
		
Invalid attribute on <assignmentRule>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20909
		
Invalid attribute on <rateRule>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
20910
		
Invalid attribute on <algebraicRule>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21001
		
Non-boolean math expression in constraint definition
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
21002
		
Incorrect order of elements in constraint definition
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
21003
		
Constraint message is not in XHTML XML namespace
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
21004
		
XML declarations not permitted in constraint messages
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
21005
		
XML DOCTYPE not permitted in constraint messages
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
21006
		
Invalid content for constraint message
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
21007
		
Only one math element on <constraint>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21008
		
Only one message element on <constraint>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21009
		
Invalid attribute on <constraint>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21101
		
Cannot have a reaction with neither reactants nor products
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21102
		
Incorrect ordering of components in reaction definition
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
21103
		
Reaction components, if present, cannot be empty
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21104
		
Invalid element in list of reactants or products
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21105
		
Invalid element in list of modifiers
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21106
		
Only one of subelement on <reaction>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21107
		
Invalid compartment attribute on <reaction>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21110
		
Invalid attribute on <reaction>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21111
		
Invalid 'species' value in species reference
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21112
		


		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
21113
		
Cannot use both 'stoichiometry' and <stoichiometryMath> simultaneously
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
21116
		
Invalid attribute on <speciesReference>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21117
		
Invalid attribute on <modifierSpeciesReference>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21121
		
Undeclared species referenced in kinetic law formula
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21122
		
Incorrect ordering of components in kinetic law definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
21123
		
The list of parameters component, if present, cannot be empty
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21124
		
Parameters local to a kinetic law must have 'constant'='true'
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
N/A
	
	

		
21125
		
'substanceUnits' not supported in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
21126
		
'timeUnits' not supported in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
N/A
	
	

		
21127
		
Only one listOfLocalParameters permitted on <kineticLaw>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21128
		
Only LocalParameters allowed in ListOfLocalParameters
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21129
		
Invalid attribute on <listOfLocalParameters>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21130
		
Only one math element on <kineticLaw>
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21131
		
Undeclared species referenced in <stoichiometryMath> formula
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
N/A
	
	

		
21132
		
Invalid attribute on <kineticLaw>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21150
		
Invalid attribute on <listOfSpeciesReferences>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21151
		
Invalid attribute on <listofModifiers>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21172
		
Invalid attribute on <localParameter>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21201
		
Missing trigger in event definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21202
		
Non-boolean math expression in trigger definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21203
		
Missing event assignment in event definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21204
		
Units of 'timeUnits' are not time units
		
N/A
		
N/A
		
Error
		
Error
		
N/A
		
N/A
		
N/A
	
	

		
21205
		
Incorrect ordering of components in event definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
N/A
	
	

		
21206
		
'useValuesFromTriggerTime'='false', but no delay defined in event
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
N/A
	
	

		
21207
		
Delay requires useValuesFromTriggerTime
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
21209
		
Trigger must have one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21210
		
Delay must have one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21211
		
Invalid value for 'variable' in event assignment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
21212
		
Cannot assign to a constant component in an event assignment
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
21213
		
EventAssignment must have one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21214
		
Invalid attribute on <eventAssignment>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21221
		
Event can only have one <delay>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21222
		
Event can only have one <listOfEventAssignments>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21223
		
<listOfEventAssignments> can only have <eventAssignment>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21224
		
Invalid attribute on <listOfEventAssignments>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21225
		
Invalid attribute on <event>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21226
		
Invalid attribute on <trigger>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21227
		
Invalid attribute on <delay>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21228
		
Persistent attribute on <trigger> must be boolean
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21229
		
InitialValue attribute on <trigger> must be boolean
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21230
		
Event can only have one <priority>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21231
		
Priority must have one math element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
21232
		
Invalid attribute on <priority>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
99101
		
Invalid SBML Level and Version
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99104
		
Annotation on <sbml> not permitted in SBML Level 1
		
Error
		
Error
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
99106
		
Invalid ordering of rules
		
Error
		
Error
		
Error
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
99107
		
Model requires an L3 package
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
99108
		
Possible L3 package detected
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
99127
		
Disallowed value for attribute 'substanceUnits'
		
Error
		
Error
		
Error
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
99128
		
Disallowed value for attribute 'timeUnits'
		
Error
		
Error
		
Error
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
99129
		
Only predefined functions are permitted in SBML Level 1 formulas
		
Error
		
Error
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
	
	

		
99206
		
The 'timeUnits' attribute is invalid in this Level+Version of SBML
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
	
	

		
99301
		
<csymbol> for 'time' used within the <math> of a function definition
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
99302
		
There must be a body within the <math> of a function definition
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	



Back to Category list

Identifier consistency
Category of errors that can occur while validating symbol identifiers in a model.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10301
		
Duplicate component identifier
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10302
		
Duplicate unit definition identifier
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10303
		
Duplicate local parameter identifier
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10304
		
Multiple rules for the same variable
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10305
		
Multiple event assignments for the same variable
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10306
		
'variable' value used in both event assignments and assignment rules
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10307
		
Duplicate 'metaid' identifier
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10308
		
Invalid 'sboTerm' value syntax
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10309
		
Invalid 'metaid' value syntax
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10310
		
Invalid identifier syntax
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10311
		
Invalid unit identifier syntax
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
	
	

		
10312
		
Invalid name syntax
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	



Back to Category list

Units consistency
Category of errors that can occur while validating the units of measurement on quantities in a model.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10501
		
Units of arguments to function call do not match function's definition
		
Warning
		
Warning
		
Warning
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10503
		
Inconsistent <kineticLaw> units
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10511
		
Mismatched units in assignment rule for compartment
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10512
		
Mismatched units in assignment rule for species
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10513
		
Mismatched units in assignment rule for parameter
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10514
		
Mismatched units in assignment rule for stoichiometry
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10521
		
Mismatched units in initial assignment to compartment
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10522
		
Mismatched units in initial assignment to species
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10523
		
Mismatched units in initial assignment to parameter
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10524
		
Mismatched units in initial assignment to stoichiometry
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10531
		
Mismatched units in rate rule for compartment
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10532
		
Mismatched units in rate rule for species
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10533
		
Mismatched units in rate rule for parameter
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10534
		
Mismatched units in rate rule for stoichiometry
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10541
		
Kinetic law units are not 'substance'/'time'
		
Error
		
Error
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10542
		
Species units not consistent with extent
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10551
		
Units of delay are not units of time
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10561
		
Mismatched units in event assignment for compartment
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10562
		
Mismatched units in event assignment for species
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10563
		
Mismatched units in event assignment for parameter
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10564
		
Mismatched units in event assignment for stoichiometry
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
10565
		
Priority units must be dimensionless
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20511
		
No units for 1D Compartment
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20512
		
No units for 2D Compartment
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20513
		
No units for 3D Compartment
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20518
		
No units for <compartment>
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20616
		
No substance units for Species
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
20702
		
No units for parameter
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Warning
	
	

		
99502
		
[Although SBML Level 1 Version 1 does not explicitly define the following as an error, other Levels and/or Versions of SBML do.] 


		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
99503
		
[Although SBML Level 1 Version 1 does not explicitly define the following as an error, other Levels and/or Versions of SBML do.] 


		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
99504
		
[Although SBML Level 1 Version 1 does not explicitly define the following as an error, other Levels and/or Versions of SBML do.] 


		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
99505
		
Undeclared units
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	



Back to Category list

MathML consistency
Category of errors that can occur while validating MathML formulas in a model.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10201
		
Invalid MathML
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10202
		
Disallowed MathML symbol
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10203
		
Disallowed use of MathML 'encoding' attribute
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10204
		
Disallowed use of MathML 'definitionURL' attribute
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10205
		
Invalid <csymbol> 'definitionURL' attribute value
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10206
		
Disallowed use of MathML 'type' attribute
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10207
		
Disallowed MathML 'type' attribute value
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10208
		
Use of <lambda> not permitted outside of a <functionDefinition>
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
10209
		
Non-boolean argument given to boolean operator
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10210
		
Non-numerical argument given to numerical operator
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10211
		
Arguments to <eq> or <neq> have inconsistent data types
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10212
		
<piecewise> terms have inconsistent data types
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10213
		
Second argument of <piece> must yield a boolean value
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10214
		
<ci> does not refer to a function definition
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10215
		
<ci>'s value is not a component in this model
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10216
		
Cannot use <kineticLaw> parameter outside local scope
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10217
		
Formula result is not a numerical value
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10218
		
Incorrect number of arguments to operator
		
N/A
		
N/A
		
Warning
		
Error
		
Error
		
Error
		
Error
	
	

		
10219
		
Incorrect number of arguments to function
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Error
	
	

		
10220
		
Attribute 'units' only permitted on cn element
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
10221
		
Invalid value for 'units' attribute
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
	
	

		
99219
		
Invalid MathML expression
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99220
		
Failed to read floating-point number
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99221
		
Failed to read an integer
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99222
		
Failed to read an exponential expression
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99223
		
Failed to read a rational expression
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	
	

		
99224
		
Invalid MathML element
		
N/A
		
N/A
		
Error
		
Error
		
Error
		
Error
		
Error
	



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SBO consistency
Category of errors that can occur while validating SBO identifiers in a model.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10701
		
Invalid 'sboTerm' value for model
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10702
		
Invalid 'sboTerm' value for function definition
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10703
		
Invalid 'sboTerm' value for parameter
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10704
		
Invalid 'sboTerm' value for initial assignment
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10705
		
Invalid 'sboTerm' value for rule
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10706
		
Invalid 'sboTerm' value for constraint
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10707
		
Invalid 'sboTerm' value for reaction
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10708
		
Invalid 'sboTerm' value for species reference
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10709
		
Invalid 'sboTerm' value for kinetic law
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10710
		
Invalid 'sboTerm' value for event
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10711
		
Invalid 'sboTerm' value for event assignment
		
N/A
		
N/A
		
N/A
		
Error
		
Error
		
Warning
		
Warning
	
	

		
10712
		
Invalid 'sboTerm' value for compartment
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
Warning
	
	

		
10713
		
Invalid 'sboTerm' value for species
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
Warning
	
	

		
10714
		
Invalid 'sboTerm' value for compartment type
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
N/A
	
	

		
10715
		
Invalid 'sboTerm' value for species type
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
N/A
	
	

		
10716
		
Invalid 'sboTerm' value for event trigger
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
Warning
	
	

		
10717
		
Invalid 'sboTerm' value for event delay
		
N/A
		
N/A
		
N/A
		
N/A
		
Error
		
Warning
		
Warning
	
	

		
99701
		
Unrecognized 'sboTerm' value
		
N/A
		
N/A
		
N/A
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
99702
		
Obsolete 'sboTerm' value
		
N/A
		
N/A
		
N/A
		
Warning
		
Warning
		
Warning
		
Warning
	



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Overdetermined analysis
Error in the system of equations in the model: the system is overdetermined, therefore violating a tenet of proper SBML.



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
10601
		
Model is overdetermined
		
Warning
		
Warning
		
Warning
		
Error
		
Error
		
Error
		
Error
	



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Modelling practice
Category of warnings about recommended good practices involving SBML and computational modeling.  
(These are tests performed by libSBML and do not have equivalent SBML validation rules.)



  

    
ErrorId
    
Meaning
    
L1V1
    
L1V2
    
L2V1
    
L2V2
    
L2V3
    
L2V4
    
L3V1
  
	

		
80501
		
It's best to define a size for every compartment in a model
		
N/A
		
N/A
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
80701
		
It's best to declare units for every parameter in a model
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	
	

		
81121
		
Local parameters defined in a kinetic law shadow global parameters
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
		
Warning
	



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