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Posts: 57
Registered: May 2008
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Release of libSBML-3.4.1
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29 Jul '09 21:14
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libSBML-3.4.1
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We are pleased to announce the release of libSBML-3.4.1 which is
available for download from
https://sourceforge.net/project/showfiles.php?group_id=71971&package_id=71670
******************************************************************************
This release contains the following:
* New features:
- There is a new ListWrapper type in the SWIG bindings that allows
functions related to List objects to be wrapped. Each language
now has types ListModelCreators, ListCVTerms, ListDates and
ListASTNodes to allow Lists containing different types to be used.
* Bug fixes:
- [Tracker issue #2818945]
The documentation of the getDerivedUnitDefinition functions
was not clarifying when the function might return NULL. The
documentation has been updated. Thanks to Ralph Gauges for
reporting this.
- [Tracker issue #2818943]
The FormulaUnitsData class was not completely copying all data
and had no assignment operator defined. This has been fixed.
Thanks to Ralph Gauges for reporting this.
- [Tracker issue #2812794]
Validation was not correctly identifying that references to
reaction 'id' was invalid in L2V1. This has been fixed. Thanks
to Ralph Gauges for reporting it.
- Validation was incorrectly identifying some configuration of
notes as invalid. This has been fixed.
- Conversion of a model where annotations with duplicate top level
elements was permissible to a level/version where this is invalid
are now performed without producing invalid SBML. Duplicate
top level elements are placed into a single top level element
named duplicateTopLevelElements in the namespace
http://www.sbml.org/libsbml/annotation.
- Unit consistency checks were producing reporting incorrect
mismatches between units where the multiplier calculated
for comparison purposes contained rounding errors. This
has been corrected. Thanks to Sven Sahle for reporting this.
- '&' in a character reference (e.g. ¨) or predefined entity
(e.g. &) could be wrongly replaced with & (e.g. ¨
-> ¨) when writing an SBML file or string. This has been
fixed. Thanks to Andreas Drager for reporting this problem.
- A number of memory leaks have been fixed.
******************************************************************************************
Please report any problems you encounter using libSBML either to the
mailing list libsbml-team@caltech.edu or using the issue tracker
for libSBML at
https://sourceforge.net/tracker/?group_id=71971&atid=942737
Thanks
Sarah, Akiya & Mike
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