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SBMLToolbox-3.1.0
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We are pleased to announce the release of SBMLToolbox-3.1.0 which is
available for download from

https://sourceforge.net/projects/sbml/files/

NOTE: This requires libSBML-4.0.1 and solves the mismatch between the
latest versions of SBMLToolbox and libSBML.

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Changes include

* New Dependencies

- libSBML-4.0.1

* New features:

- SBML Level 2 Version 4 support is now implemented.

- The functions that validate the MATLAB_SBML structures return
a message indicating which elements within the structure have
caused the failure. This message is an optional second return
argument.

- Simulation of models that use functionDefinitions within rules
has been implemented.

- A function to produce an analytical solution of a model has
been implemented.

- All functions are completely Octave compatible with the
exception of functions using the Symbolic Toolbox.

* Bug fixes:

- Tracker issue #2780454.
The Model_create function was not correctly specifying level
and version. This has been fixed. Thanks to Kieran Smallbone
for reporting it.

- Tracker issue #1928173.
The OutputSBML function was failing to correctly output an empty
stoichiometryMath structure in an L2V3 model. This was due to the
fact that for L2V3 models the stoichiometryMath element was correctly
derived from an SBase object and thus became a structure rather
than just a field in a MATLAB_SBML structure. This has been
corrected.

- Tracker issue #1912974.
The validation of a model with a large number of errors caused
MATLAB to crash. This was due to an error in the calculation
of the memory needed to store and report the errors.

- Tracker issue #1912971.
There was a typo in the RunTest function that caused it
not to run. This is fixed.

- Tracker issue #1912965.
The functions that generate the code to simulate events
failed to take into account the fact that the structure of
the 'trigger' had changed. This has been fixed.

- More rigorous testing revealed several small bugs in the
event handling functions; which have now been corrected.

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Please report any problems you encounter using SBMLToolbox either to the
mailing list sbml-team@caltech.edu or using the issue tracker
for SBMLToolbox at

https://sourceforge.net/tracker/?group_id=71971&atid=1050048

Thanks

Sarah
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