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Posts: 11
Registered:
January 2011
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Posts: 11
Registered:
January 2011
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Posts: 413
Registered:
May 2004
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Re: Substitute.m error: nested brackets found in input
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27 Oct '11 01:11
 
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Hi Celine
There are some formations of math that the Substitute function does not
handle. The difficulty being that when the math is imported into MATLAB
it becomes a string and so parsing it is a little problematic.
Could you send me the sbml file or at least the assignment rules where
the math that is causing this problem is ? Then I can either find a bug
in Substitute or suggest a way of styling the math that MATLAB will deal
with.
Thanks
Sarah
On 27/10/2011 00:52, celine wrote:
>
> Silly me! I put the files in the wrong place... instead of putting them where the toolbox would look, I think I put them where I unzipped the install files. Opps!
>
>
> I have a new error now:
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>> ??? Error using ==> Substitute at 58
>> Substitute(): Ill formed formula
>>
>> Error in ==> GetGlobalParameters at 76
>> Values(i) = Substitute(AR.formula, newSBMLModel);
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>> Error in ==> GetAllParametersUnique at 46
>> [ParamChar, ParamValues] = GetGlobalParameters(SBMLModel);
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>> Error in ==> /home/celine/Documents/MATLAB/SBML-SAT-v1.1/src/ModelProcess/ModelAnalysis.p>ModelAnalysis at 65
>>
>>
>> Error in ==> /home/celine/Documents/MATLAB/SBML-SAT-v1.1/src/GUI/SBML_SAT.p>open_menu_Callback at 170
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>>
>> Error in ==> gui_mainfcn at 96
>> feval(varargin{:});
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>> Error in ==> /home/celine/Documents/MATLAB/SBML-SAT-v1.1/src/GUI/SBML_SAT.p>SBML_SAT at 56
>>
>>
>> ??? Error while evaluating uipushtool ClickedCallback
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>
>
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Posts: 11
Registered:
January 2011
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Re: Substitute.m error: nested brackets found in input
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27 Oct '11 11:52
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Hi Sarah,
Thanks so much for your help (again). I've attached the file in question (hopefully).
Celine
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