Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » sbml-discuss » Antimony 2.2 and 2.3-beta released
Show: Today's Posts  :: Message Navigator
Switch to threaded view of this topic Create a new topic Submit Reply
AuthorTopic
Lucian Smith


Posts: 183
Registered:
July 2008
Antimony 2.2 and 2.3-beta released 13 Aug '12 17:29

We are pleased to announce the release of version 2.2 and 2.3-beta of
Antimony, the modular, human-readable, human-writeable model definition
language at:

http://antimony.sourceforge.net/

where you can download the Windows installer, source code, and
documentation.

Both new versions of Antimony now support:
* Units
* Deletions
* Submodel time and extent conversion factors
* Individual variable conversion factors

Version 2.3-beta will additionally convert those concepts into
Hierarchical Model Composition package constructs. Version 2.3 is a beta
release solely because the Hierarchical Model Composition package has not
yet been approved; since one of the requirements for package approval is
having working implementations, it is hoped that this release of Antimony
will further that goal.

The documentation has not yet been updated to reflect the new
capabilities, but in brief, the syntax for the new constructs is:

Units:
unit mL = 1e-3 moles/liter;
x = 27 mL;
y = 23 mL + x;
y has mL;

Deletions:
delete S1.x

Submodel time and extent conversion factors:
S1: submodel1(), timeconv=60, extentconv=1000;
S2: submodel2(), timeconv=tc, extentconv=xc;
tc=3600;
xc=10e-3;

Individual conversion factors:
S1.y * cf1 is Y;
S1.z is Z/cf1;

Any questions, feel free to contact me (lpsmith@uw.edu) or one of lists
cc'ed in this message. We would like to thank the NIH for their support,
both for Dr. Herbert Sauro, whose lab this work started in, and Dr.
Michael Hucka, whose lab this work has most recently been supported by.

Thank you!

-Lucian Smith
____________________________________________________________
To manage your sbml-discuss list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss

For a web interface to the sbml-discuss mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the sbml-discuss list,
contact sbml-team@caltech.edu

      
  Switch to threaded view of this topic Create a new topic Submit Reply
Previous Topic:Missing libSBML test cases
Next Topic:23rd release of BioModels Database
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.