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AuthorTopic
Nicolas Le Novere


Posts: 469
Registered:
October 2003
Re: parameters and namespaces 29 Apr '05 14:51 Go to previous messageGo to previous message


> Why complicate matters further by adding another special case when
> interpreting SBML (e.g. SBML L1v1, L1v2, L2v1 allow for local
> parameters, L2v2 turn local parameter processing off)?

Alternatively, let's keep the parameter system as it is, but let's decide
the ids of the various model components are in different namespaces. What
is the use of having compartments, species and parameter ids in the same
namespace?

In SBMLeditor, we keep record of the different lists, and only the metaid
are file-wide (am-I wrong Nicolas?). I strongly suspect this is the case
of almost all software.

--
Nicolas LE NOVÈRE, Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223 494 521, Fax: +44(0)1223 494 468, Mob: +33(0)689218676
http://www.ebi.ac.uk/~lenov


      

SubjectPosterDate
Read Message   parameters and namespaces Nicolas Le Novere29 Apr '05 02:05
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:10
Read Message   RE: parameters and namespaces Nicolas Le Novere29 Apr '05 02:18
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:25
Read Message   RE: parameters and namespaces Nicolas Le Novere29 Apr '05 02:33
Read Message   RE: parameters and namespaces hugh.d.spence29 Apr '05 03:22
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:40
Read Message   Re: parameters and namespaces Stefan Hoops29 Apr '05 04:09
Read Message   Re: parameters and namespaces Nicolas Le Novere29 Apr '05 09:52
Read Message   Re: parameters and namespaces Ben Bornstein29 Apr '05 12:02
Read Message   Re: parameters and namespaces  Nicolas Le Novere29 Apr '05 14:51
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:38
Read Message   Re: parameters and namespaces Nicolas Le Novere30 Apr '05 07:30
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 02:43
Read Message   RE: parameters and namespaces Nicolas Le Novere07 May '05 14:44
Read Message   RE: parameters and namespaces Mike Hucka07 May '05 18:44
Read Message   Re: parameters and namespaces Stefan Hoops29 Apr '05 12:12
Read Message   Re: parameters and namespaces JWagner29 Apr '05 14:09
Read Message   Re: parameters and namespaces Darren J Wilkinson29 Apr '05 14:38
Read Message   Re: parameters and namespaces Nicolas Le Novere29 Apr '05 14:47
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:35
Read Message   Re: parameters and namespaces JWagner29 Apr '05 09:00
Read Message   RE: parameters and namespaces Herbert Sauro29 Apr '05 15:29
Read Message   Re: parameters and namespaces Ben Bornstein29 Apr '05 17:51
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:32
Read Message   Re: parameters and namespaces Nicolas Le Novere30 Apr '05 07:26
Read Message   Re: parameters and namespaces Mike Hucka01 May '05 01:31
Read Message   Re: parameters and namespaces Nicolas Le Novere01 May '05 10:04
Read Message   Re: parameters and namespaces ginkel02 May '05 01:40
Read Message   Re: parameters and namespaces Pedro Mendes02 May '05 06:55
Read Message   Re: parameters and namespaces Mike Hucka03 May '05 09:18
Read Message   Re: parameters and namespaces Mike Hucka03 May '05 09:17
Read Message   RE: parameters and namespaces Andrew Finney12 May '05 11:42
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 20:10
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 19:20
Read Message   RE: parameters and namespaces Kouichi Takahashi10 May '05 15:47
Read Message   Re: parameters and namespaces Stefan Hoops11 May '05 04:20
Read Message   RE: parameters and namespaces Mike Hucka16 May '05 20:36
Read Message   RE: parameters and namespaces R Phair16 May '05 21:34
Read Message   RE: parameters and namespaces Mike Hucka17 May '05 04:04
Read Message   Re: parameters and namespaces Kouichi Takahashi17 May '05 14:31
Read Message   Re: parameters and namespaces Upinder Singh Bhalla17 May '05 19:22
Read Message   Re: parameters and namespaces Nicolas Le Novere18 May '05 09:33
Read Message   Re: parameters and namespaces Kouichi Takahashi18 May '05 13:31
Read Message   Re: parameters and namespaces Kouichi Takahashi18 May '05 16:08
Read Message   Re: parameters and namespaces Kouichi Takahashi17 May '05 15:47
Read Message   RE: parameters and namespaces Andrew Finney22 May '05 05:38
Read Message   Regarding compartments emek23 May '05 08:23
Read Message   Re: Regarding compartments Upinder Singh Bhalla23 May '05 19:22
Read Message   Re: Regarding compartments ginkel24 May '05 00:35
Read Message   Re: Regarding compartments Upinder Singh Bhalla24 May '05 19:30
Read Message   Re: Regarding compartments Darren J Wilkinson24 May '05 23:05
Read Message   Re: Regarding compartments Nicolas Le Novere24 May '05 01:00
Read Message   Re: Regarding compartments emek24 May '05 01:31
Read Message   Re: Regarding compartments Nicolas Le Novere24 May '05 14:04
Read Message   Re: Regarding compartments marcoxa24 May '05 05:19
Read Message   Re: Regarding compartments Pedro Mendes24 May '05 08:30
Read Message   Re: Regarding compartments Howard24 May '05 09:24
Read Message   Re: Regarding compartments Greg Blumenthal24 May '05 16:37
Read Message   Re: Regarding compartments Mike Hucka24 May '05 23:25
Read Message   Re: parameters and namespaces ginkel10 May '05 23:53
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 00:36
Read Message   Re: parameters and namespaces Sven Sahle13 May '05 05:14
Read Message   Re: parameters and namespaces Nicolas Le Novere03 May '05 11:19
Read Message   RE: parameters and namespaces Herbert Sauro05 May '05 17:52
Read Message   Re: parameters and namespaces Ben Bornstein05 May '05 20:08
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 00:39
Read Message   [ANN] CL-SBML new release marcoxa12 May '05 12:26
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 01:22
Read Message   RE: parameters and namespaces Herbert Sauro13 May '05 18:08
Read Message   RE: parameters and namespaces Herbert Sauro17 May '05 10:01
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