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SBML Discussions » sbml-discuss » SBML L2v2 specification vote #4: References to controlled vocabularies
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Mike Hucka


Posts: 961
Registered:
October 2003
Re: SBML L2v2 specification vote #4: References to controlled vocabularies 03 Jan '06 00:33 Go to previous messageGo to previous message

Hi Hiro,

You ask some very good questions:

kuwahara> Hi, I am just curious as to what is the
kuwahara> significance of this survey in terms of the next
kuwahara> SBML spec. If the voting results are meant to
kuwahara> reflect the voices of the SBML community and to
kuwahara> be taken into account seriously, then I think a
kuwahara> better means should be used. With the current
kuwahara> survey program, anyone can easily cast his/her
kuwahara> vote multiple times. So those who have very
kuwahara> strong feelings towards certain topics can
kuwahara> influence the results by casting their votes
kuwahara> multiple times.

Only the last vote is taken. (I check for duplicate names
and take only the last vote from each given person, ignoring
any previous votes.) I mentioned this point in a message
that was probably buried under other discussions:
http://www.sbml.org/forums/index.php?t=msg&th=722&start=0&rid=2


kuwahara> I am also wondering if there exists a
kuwahara> standardization process for the SBML
kuwahara> specification. For example, what is the
kuwahara> procedure for a porposal to become a new feature
kuwahara> in the next spec and who are involved in the
kuwahara> process? And who decides which features to be
kuwahara> added? Can those who have proposed new features
kuwahara> also be on the specification committee (if such
kuwahara> things exist)? If so, isn't that a conflict of
kuwahara> interest?

All of this has been in the hands of the "SBML editors",
which are currently Andrew Finney and myself. Up till now,
there has not been a more formal process (though we tried to
propose and introduce one circa 2003, to lukewarm
reception).

The voting approach you're seeing is a new development, a
move on the way towards a better process for SBML. I
presented an initial proposal at the October meeting (see my
slides at http://www.sbml.org/workshops/tenth/index.html on
"Restructuring the SBML process") and there will be formal
proposals circulated to this list soon. Ideally we would
have had the process in place in time for development of
SBML L2v2, but <insert excuses about lack of time here>, so
the current newly-introduced voting approach are a
half-measure, but one that also provides everyone with some
experience in the voting process and will hopefully let us
design something better for the more formal SBML process.

I promise there will be proposals and discussion on this
topic. The current scheme of having a handful of editors
(me, Andrew, Herbert and Hamid) do everything and make all
evaluations more-or-less worked when there weren't many
other people and projects involved, but it's unsustainable
today. We need something more open, formalized and
standardized -- closer to a standards-body organization like
the W3C (but simpler, because there aren't *that* many
people in the SBML world).

MH

      

SubjectPosterDate
Read Message   SBML L2v2 specification vote #4: References to con... Mike Hucka13 Dec '05 14:21
Read Message   Re: SBML L2v2 specification vote #4: References t... Ralph.Gauges15 Dec '05 06:57
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence15 Dec '05 10:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges16 Dec '05 00:27
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere16 Dec '05 10:11
Read Message   Re: SBML L2v2 specification vote #4: References to... Sven Sahle19 Dec '05 04:53
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence16 Dec '05 10:56
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard16 Dec '05 11:43
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence19 Dec '05 04:00
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard19 Dec '05 09:19
Read Message   Re: SBML L2v2 specification vote #4: References to... Martin Ginkel21 Dec '05 12:26
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 15:30
Read Message   Re: SBML L2v2 specification vote #4: References t... Nicolas Le Novere16 Dec '05 01:27
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 11:31
Read Message   Re: SBML L2v2 specification vote #4: References t... Nicolas Le Novere20 Dec '05 16:05
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 19:42
Read Message   Re: SBML L2v2 specification vote #4: References t... bshapiro15 Dec '05 12:15
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 19:50
Read Message   Re: SBML L2v2 specification vote #4: References t... Ben Bornstein21 Dec '05 09:25
Read Message   RE: SBML L2v2 specification vote #4: References to... Ralph.Gauges17 Dec '05 09:11
Read Message   RE: SBML L2v2 specification vote #4: References to... Nicolas Le Novere19 Dec '05 08:52
Read Message   RE: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 15:11
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges21 Dec '05 02:04
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 23:33
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere03 Jan '06 00:21
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 15:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 03:08
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere06 Jan '06 10:37
Read Message   Re: SBML L2v2 specification vote #4: References to... Martin Ginkel05 Jan '06 01:44
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere03 Jan '06 00:50
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence05 Jan '06 05:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere05 Jan '06 11:01
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence06 Jan '06 02:48
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere06 Jan '06 10:32
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence03 Jan '06 04:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 20:55
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro03 Jan '06 12:52
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops03 Jan '06 14:16
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 15:39
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 03:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops04 Jan '06 09:46
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 14:24
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 02:55
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard19 Dec '05 09:22
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges20 Dec '05 01:48
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard20 Dec '05 11:13
Read Message   RE: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 19:56
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro20 Dec '05 20:18
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 23:55
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence21 Dec '05 02:18
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka21 Dec '05 05:48
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro21 Dec '05 11:35
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 15:44
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 07:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 09:22
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 10:12
Read Message   Re: SBML L2v2 specification vote #4: References to... Pedro Mendes22 Dec '05 10:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 11:18
Read Message   Re: SBML L2v2 specification vote #4: References to... zucker22 Dec '05 11:54
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 12:13
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges23 Dec '05 01:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 20:49
Read Message   Partial compliance [was] SBML L2v2 specification ... Nicolas Le Novere03 Jan '06 00:08
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro22 Dec '05 12:05
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 12:21
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka23 Dec '05 09:07
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard23 Dec '05 10:07
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere22 Dec '05 05:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 08:25
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere22 Dec '05 10:19
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 10:31
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro22 Dec '05 10:58
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka22 Dec '05 12:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Darren J Wilkinson23 Dec '05 12:12
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka23 Dec '05 15:46
Read Message   Re: SBML L2v2 specification vote #4: References to... Hiroyuki Kuwahara24 Dec '05 22:01
Read Message   Re: SBML L2v2 specification vote #4: References to...  Mike Hucka03 Jan '06 00:33
Read Message   Re: SBML L2v2 specification vote #4: References to... Hiroyuki Kuwahara04 Jan '06 10:27
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka04 Jan '06 11:49
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 22:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 20:20
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 10:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Sven Sahle22 Dec '05 01:56
Read Message   RE: SBML L2v2 specification vote #4: References to... Nicolas Le Novere21 Dec '05 10:08
Read Message   RE: SBML L2v2 specification vote #4: References to... zucker21 Dec '05 11:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges22 Dec '05 02:53
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges22 Dec '05 02:57
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 08:10
Read Message   RE: SBML L2v2 specification vote #4: References to... Herbert Sauro22 Dec '05 13:08
Read Message   Re: SBML L2v2 specification vote #4: References to... zucker23 Dec '05 22:28
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka26 Dec '05 09:11
Read Message   Results of SBML L2v2 specification survey vote #4 Mike Hucka04 Jan '06 23:37
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