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Hey everyone im new here and new to SBML and have a few questions about converting my system to SBML.

My models are all represented in text files.
So far, using java i've been able to automatically identify what parts of my model correspond to what parts of the SBML model. for example

Whenever i see a (dt 1 ?), i know that the variable ? is going to be a Species.

With this information i've been able to store all the components i think i need in various ArrayLists.

And now i'm stumped. What is the next step in the process? If you have changed your own software to conform to SBML, there must have been a stage where you just had the raw information in a text file or in some ArrayLists so what did you do next?

Thanks a lot for any help.

EC