Forums

We are please to announce a new version of SBMLeditor.
You can download it from :

http://www.ebi.ac.uk/compneur-srv/SBMLeditor.html


Changes since 1.3 :

Allow the creation of SBML level 2 version 3 only. Older versions
can still be used normally but cannot be created from scratch
inside the SBMLeditor.

Conversion from older versions to Level 2 Version 3 now available.

Keyboard shortcuts are shown in the menu item when possible.
Update of some of the menu names.

Disabled "deprecated" or "deleted" attributes like species.charge.
Add an option to switch it on or off.
unit.offset --> removed from any SBML level and version
Celcius unit --> removed from any SBML level and version

Added an help menu with some documentation (draft).
Documentation is displayed in separate frames that can
be left open while editing models.

Added some MIRIAM qualifiers: isEncodedBy, encodes and occursIn.

Added an option (enable.sbw) in sbml.properties to enable or not SBW.
Is is disable by default.

Select by default the compartment when one edits/creates a species
and there is only one compartment define in the model.

Updated the MIRIAM export file, to use the new URI scheme and the
new XML schema

Added a converter for the old URI/URLs: when one opens a model in
SBMLeditor, the URI is replaced by the official URN.

Corrected a bug when deleting a MIRIAM annotation. Since we use the
bqbiol and bqmodel namespaces, trying to remove one MIRIAM annotation
on another SBML element than model, would delete the whole RDF
element with any remaining annotations.


Getting support :

Please send any help requests or bug reports to :

biomodels-net-support at lists.sourceforge.net
(waiting for a proper tracker)

Please, use the string "[SBMLeditor]" in the title of your mail.


SBMLeditor is developed by the teams of Nicolas Le Novère
Nicolas Rodriguez,
European Bioinformatics Institute

____________________________________________________________
To manage your sbml-discuss list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss

For a web interface to the sbml-discuss mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the sbml-discuss list,
contact sbml-team@caltech.edu