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Posts: 273
Registered:
June 2006
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Astnode can't be exported to SBML
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14 Jan '09 10:08
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Dear all,
Attached you can find a simple class, which should produce a minimal SBML model with only one reaction and a given kinetic equation (a bit more complex one). No error is thrown during execution. However, someting's wrong with the output and I wonder if anybody knows the reason.
I have a formula string (in C-like notation) and pass it to the kinetic law object. Afterwards I use the SBML2LaTeX function to display the ASTNode created from the formula string. This is correct. But the SBML file created cannot be validated without errors on the online validator page.
And all parameters starting with "kG_" don't appear in the MathML formula. I don't know how these dissapear because they are part of the ASTNode tree (otherwise they wouldn't appear in the LaTeX code).
I am grateful for any hint!
Cheers,
Andreas
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