Forums

Hi Richard,

You are more than welcome to test our application, sorry for the long delay
in the reply.

2010/1/6 Richard Adams <otter606@users.sourceforge.net>

>
> Message body follows:
>
> Dear Nicolas,
> Was very interested to learn of this initiative - here in Edinburgh we're
> developing a lot of Java systems biology code( www.sbsi.ed.ac.uk,
> www.biopepa.org, www.pathwayeditor.org) and I'd be able some help
> with testing in our application. I'm also involved in jlibsedml, an attempt
> to provide a Java native SED-ML supporting library (http://sed-
> ml.svn.sourceforge.net/viewvc/sed-ml/sed-ml/) - we'd be really
> interested in the AST classes as SEDML uses the same subset of
> MathML as SBML - is there any development work needed in these
> classes that I could contribute to?
>

I forward this mail to the jsbml list as Andreas is more the one to talk to
for that.
I am not sure that the ASTNode.parseFormula(String) is implemented yet for
example.

And in fact, I think, we have nothing yet to transform mathML into an
ASTNode without using libsbml.
Can you confirm Marine ? Are you creating the ASTNode at the moment ?



> Can I just ask, are you trying to support level 3 of libSBML?
>

Yes, we should be supporting it even now, at least the first draft, I did
not have time to check the Release Candidate of the specs.
Of course, it need a lot more testing as we do not have a lot of data at the
moment.
We need to convert the test files from libsbml to start I think.

Thanks,
Nico
____________________________________________________________
To manage your jsbml-development list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/jsbml-development

For a web interface to the jsbml-development mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the jsbml-development list,
contact sbml-team@caltech.edu