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fbergman


Posts: 122
Registered:
February 2010
A Level 3 Extension for Flux Balance Analysis 24 Feb '10 12:38 Go to previous message

Dear SBML Community,

at the least SBML Forum meeting Brett presented ideas for an extension of
SBML Level 3 in order to encode models suitable for flux balance analysis.
After this meeting we went ahead and formalized our thoughts in the proposal
below:

http://precedings.nature.com/documents/4236/version/1

we also developed first prototypical implementations in a SBW Module for
Flux Balance Analysis, and a PySCeS FBA module and were able to successfully
exchange models.

Now we are interested in hearing your thoughts about it.

Best
Frank Bergmann & Brett Olivier

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SubjectPosterDate
Read Message   A Level 3 Extension for Flux Balance Analysis  fbergman24 Feb '10 12:38
Read Message   Re: A Level 3 Extension for Flux Balance Analysis myers24 Feb '10 13:34
Read Message   Re: A Level 3 Extension for Flux Balance Analysis fbergman24 Feb '10 13:43
Read Message   Re: A Level 3 Extension for Flux Balance Analysis hsauro24 Feb '10 13:44
Read Message   Re: A Level 3 Extension for Flux Balance Analysis kieransmallbone24 Feb '10 14:27
Read Message   Re: A Level 3 Extension for Flux Balance Analysis fbergman24 Feb '10 14:31
Read Message   Re: A Level 3 Extension for Flux Balance Analysis myers24 Feb '10 14:52
Read Message   Re: A Level 3 Extension for Flux Balance Analysis hsauro24 Feb '10 15:16
Read Message   Re: A Level 3 Extension for Flux Balance Analysis Stefan.Hoops24 Feb '10 15:33
Read Message   Re: A Level 3 Extension for Flux Balance Analysis hsauro24 Feb '10 16:04
Read Message   Re: A Level 3 Extension for Flux Balance Analysis Pedro Mendes25 Feb '10 00:51
Read Message   Re: A Level 3 Extension for Flux Balance Analysis Nicolas Le Novere25 Feb '10 04:14
Read Message   Re: A Level 3 Extension for Flux Balance Analysis Stefan.Hoops25 Feb '10 05:11
Read Message   Re: A Level 3 Extension for Flux Balance Analysis kieransmallbone25 Feb '10 01:17
Read Message   Re: A Level 3 Extension for Flux Balance Analysis fbergman25 Feb '10 09:10
Read Message   Re: A Level 3 Extension for Flux Balance Analysis brett.olivier25 Feb '10 11:06
Read Message   Re: A Level 3 Extension for Flux Balance Analysis myers24 Feb '10 14:27
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