Forums

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JSBML-0.8-b1
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We are pleased to announce the release of JSBML-0.8-b1 which is
available for download from

https://sourceforge.net/projects/jsbml/files/jsbml/0.8-b1

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Version 0.8-b1 (04-02-2011)
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This the first beta release of JSBML 0.8, JSBML is a community-driven
project to create a free, open-source, pure Java library for reading,
writing, and manipulating SBML files and data streams. It is an
alternative to the mixed Java/native code-based interface provided in
libSBML.


For more details, please visit http://sbml.org/Software/JSBML

* Bug Fixes :
- [Tracker issue #3137967]
Namespaces in the sbml element were incorrectly parsed, some known
namespaces like html were not kept for examples. This is fixed, thanks
to Paulo Maia for reporting this.

* Known issues :
- problem of output indentation for notes, when there is several top
level elements.

- the method SBMLDocument.checkConsistency() is not working. There is
a problem in the parsing of the XML return by the sbml.org validator.

- dependency on the sbml.org validator which might not be robust
enough (you cannot submit a file bigger 15MB for example).
It would be better to be able to install your own localy or at
least have several mirrors. We will have to see how it performs.

- in a mathML block, if one 'ci'element is suppose to represent a
functionDefinition but the id is not a valid id, the type of the
ASTNode is not set properly, so there are some errors when trying to use
the corresponding ASTNode tree. (cf model generated by COBRA)

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Please try it and report any problems you encounter using jSBML either
to the
mailing list jsbml-team@caltech.edu or using the issue tracker
for jSBML at

http://sourceforge.net/tracker/?group_id=279608&atid=1186776


Thanks

The jSBML team.


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