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Posts: 12
Registered: November 2010
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libsbml-5.0.0 + Matlab bindings
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08 May '11 03:29
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Hello,
I've installed libsbml-5.0.0 on a clean install of Ubuntu 11.04 (64bit).
I've used the CMake method as explained in
http://sbml.org/Software/libSBML/docs/cpp-api/libsbml-installation.html#unix-cmake
This went well, the documentation says to use 2.8.4, but the version I
used was 2.8.3. Compilation was able to run 'make -j 9' which compiles
in parallel, something that did not work with previous versions of
libsbml.
Enabling the Matlab bindings, as explained in
http://sbml.org/Software/libSBML/docs/cpp-api/libsbml-accessing.html#accessing-matlab
did not work. The documentation says that the bindings will have been
installed in /usr/local/lib (assuming you left the default values when
configuring and compiling), but this is not so. The matlab bindings are
installed in /usr/local/share/libsbml/bindings/matlab/ . The libsbml-4.*
series used to install the files in the correct location.
Not a problem because of libsbml, but affecting libsbml, is an error
with matlab on some systems with recent gcc, search for 'matlab version
`GLIBCXX_3.4.11' not found'. To overcome this, I start matlab with
bash -c
"LD_PRELOAD=/lib/x86_64-linux-gnu/libc.so.6:/usr/lib/x86_64-linux-gnu/libstdc++.so.6 /opt/MATLAB/R2010b/bin/matlab -desktop"
Regards,
Pieter
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