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Fedor Kolpakov


Posts: 46
Registered:
September 2003
BioUML - 0.9.2 (beta) 17 Jun '11 05:27 Go to previous message

We are pleased to announce the a release of BioUML platform version 0.9.2(beta).

BioUML workbench is available for download at:
http://www.biouml.org/download.shtml?0.9.2/workbench

BioUML web edition is also available (you can login as anonymous):
http://ie.biouml.org/bioumlweb

New features and main changes in version 0.9.2:

*Import for Process Diagrams in CellDesigner 4.0/4.1 format

*Data analysis
- a lot of new methods for analyses of microarray data
- import data in different formats
- JavaScript API to work with models and simulation engine (JavaScript host objects model and simulationEngine)

*Workflow support
- improved graphic editor
- cycles
- patterns for input/output parameters
- automatic orthogonal layout for edges

*Simulation engine
- composite models (beta version): graphic notation improvements, special preprocessor to generate flat model
- agent based models - improved, new elements

*User interface improvements
- a lot of new icons
- drag & drop support
- improved filter for tables(user can filter rows using some expression)
- improved graph layout: hierarchical layout, orthogonal layout

*Mathematical expressions:
- special editor for all mathematical expressions
- user can use node title (instead of its name/identifier) in math expressions
- different modes to show variable names (using id or title)

*Coloring diagram using omics data (redesigned)

*BioUML server:
- PantherDB pathways in CellDesigner 4.1 format
- Reactome database: direct access using SQL, display diagrams in SBGN graphic notation 
- security improvements

If you will have any questions or problems with BioUML workbench/web edition please contact fedor@biouml.org

We appreciate your feedback!

Fedor Kolpakov (on behalf of BioUML team)

      

SubjectPosterDate
Read Message   BioUML - 0.9.2 (beta)  Fedor Kolpakov17 Jun '11 05:27
Read Message   BioUML Devlopment Kit - 0.9.2 (beta) Fedor Kolpakov11 Jul '11 07:29
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