| Author | Topic |
|---|
Posts: 187
Registered:
July 2008
|
|
Re: Piecewise model examples
|
20 Jun '12 13:32
|
 |
|
Grepping through my copy of the biomodels, I found the following that have
one or more 'piecewise' functions in them:
19
25
75
141
142
161
162
164
165
167
173
179
180
208
234
237
238
248
255
256
262
263
264
266
268
276
277
279
286
301
302
316
317
326
There are also a bunch of models in the SBML test suite that use
'piecewise', which has the additional advantage of having explicit results
you should get when simulating:
190
191
192
193
194
195
198
199
200
201
270
272
273
274
276
277
278
279
936
957
958
959
1112
1113
1114
1115
1116
In fact, if you're not already using the test suite to test your results,
I would strongly suggest that you do so--it was created expressly for the
purpose of testing all aspects of SBML models, including the weird edge
cases you can get that you'll probably need special-case routines for.
Finally, it should also be pretty straightforward to use model-creating
software to make simple models with 'piecewise' functions in them--just
type in 'piecewise' when you're putting in your equation for
whatever-it-is.
-Lucian Smith
* Abe Martin <oacomvc@yahoo.com> [2012-06-20 19:24] writes:
> SBML Group,
>
> I'm an undergrad working with John Hedengren on his APM project. ?I am developing a converter to convert SBML to the APM format, expanding on the SBFC converter. ?I am currently working to enable conversion of piecewise functions, and I am looking for some models to use for testing. ?Does anyone have suggestions of some simple SBML models involving piecewise functions that might be useful for development? ?
>
> Thank you,
> Abe Martin
> ____________________________________________________________
> To manage your sbml-discuss list subscription, visit
> https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss
>
> For a web interface to the sbml-discuss mailing list, visit
> http://sbml.org/Forums/
>
> For questions or feedback about the sbml-discuss list,
> contact sbml-team@caltech.edu
____________________________________________________________
To manage your sbml-discuss list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss
For a web interface to the sbml-discuss mailing list, visit
http://sbml.org/Forums/
For questions or feedback about the sbml-discuss list,
contact sbml-team@caltech.edu
|
|
|
