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Nicolas Le Novere


Posts: 469
Registered:
October 2003
Re: Stochastic simulation in SBML 29 Nov '11 14:24 Go to previous messageGo to previous message

On 29/11/11 22:18, Darren Wilkinson wrote:
> --- On Tue, 29/11/11, Michael Hucka<mhucka@caltech.edu> wrote:
>> This problem was the original reason why SBO was
>> invented. Adding SBO terms to the model should be
>> enough to help a tool determine the assumptions underlying a
>> model.
>>
>> Why is that not enough for this?
>
> Because SBO terms can not (and should not) affect the mathematical interpretation of the model.

Not the mathematical interpretation of the *model*, but the conceptual
framework it is meant to be used with. This is the whole point of the
"modelling framework" branch. Each MathML of the "mathematical expression"
branch carries a semantic element specifically for this purpose.

If I remember well Darren, you attended the dedicated meeting in Boston
that put the initial branches together :-)

> Cheers,
>
> Darren
>
> --
> Darren Wilkinson
> email: darrenjwilkinson@btinternet.com
> www: http://www.staff.ncl.ac.uk/d.j.wilkinson/
>
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--
Nicolas LE NOVERE, Computational Systems Neurobiology, EMBL-EBI, WTGC,
Hinxton CB101SD UK, Mob:+447833147074, Tel:+441223494521 Fax:468,
lenov@ebi.ac.uk, Skype:n.lenovere, twitter:@lenovere
http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/

Fight against prostate cancer (and support my moustache):
Donate at http://mobro.co/lenov

____________________________________________________________
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SubjectPosterDate
Read Message   Stochastic simulation in SBML myers29 Nov '11 11:50
Read Message   Re: Stochastic simulation in SBML Andrew Miller29 Nov '11 12:19
Read Message   Re: Stochastic simulation in SBML Frederic.BOIS29 Nov '11 12:31
Read Message   Re: Stochastic simulation in SBML Pedro Mendes29 Nov '11 12:40
Read Message   Re: Stochastic simulation in SBML Mike Hucka29 Nov '11 13:39
Read Message   Re: Stochastic simulation in SBML Pedro Mendes29 Nov '11 13:46
Read Message   Re: Stochastic simulation in SBML Lucian Smith29 Nov '11 12:42
Read Message   Re: Stochastic simulation in SBML Darren J Wilkinson29 Nov '11 12:45
Read Message   Re: Stochastic simulation in SBML myers29 Nov '11 13:38
Read Message   Re: Stochastic simulation in SBML Mike Hucka29 Nov '11 13:44
Read Message   Re: Stochastic simulation in SBML myers29 Nov '11 13:57
Read Message   Re: Stochastic simulation in SBML Darren J Wilkinson29 Nov '11 14:07
Read Message   Re: Stochastic simulation in SBML Mike Hucka29 Nov '11 14:09
Read Message   Re: Stochastic simulation in SBML Darren J Wilkinson29 Nov '11 14:18
Read Message   Re: Stochastic simulation in SBML  Nicolas Le Novere29 Nov '11 14:24
Read Message   Re: Stochastic simulation in SBML Stefan.Hoops29 Nov '11 16:47
Read Message   Re: Stochastic simulation in SBML curoli30 Nov '11 03:32
Read Message   Re: Stochastic simulation in SBML Stefan.Hoops29 Nov '11 16:30
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