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Herbert Sauro


Posts: 349
Registered:
September 2003
RE: how to write SBML using data from EXCEL 29 Mar '06 17:30 Go to previous message


We've converted all the Palsson networks to SBML by using a perl script
to convert their excel data into a Jarnac script then using Jarnac to
convert it to SBML. I also believe the San Diego group now have their
own perls scripts to do the same thing.

Herbert Sauro

-----Original Message-----
From: l.quek@uq.edu.au [mailto:l.quek@uq.edu.au]
Sent: Wednesday, March 29, 2006 3:05 PM
To: sbml-discuss@caltech.edu
Subject: [sbml-discuss] how to write SBML using data from EXCEL

hi,

My original metabolic network database has been collated in Excel. But
now I find that I'm stuck with a long list of reactions. I would like to
re-write the reaction networks into SBML format. What application or
method would you be able to recommend in order for me to perform this
task.

Thanks.



      

SubjectPosterDate
Read Message   how to write SBML using data from EXCEL Daniel29 Mar '06 15:04
Read Message   RE: how to write SBML using data from EXCEL  Herbert Sauro29 Mar '06 17:30
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