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Hi Delboy

I ran your model through the soon to be released libSBML and it turned
up the following:

</lsitOfCompartments> as Stefan pointed out

all your <ci> elements should have the closing </ci> tag

a hyphen is not part of an id syntax so "single-tank" is not allowed

the sbml namespace should be http://www.sbml.org/sbml/level2

Correct these and its a valid model :-)

Sarah


Delboy wrote:
> Thankyou for that. I just wanted to look at it to get some ideas of how to code my own generator. I've got a rough one that outputs some SBML xml, but the validator doesn't like it for some reason and the error mesage ain't too helpful. Could anyone take a look and see if there is anything wrong with this xml that im generating:
>
> <?xml version="1.0" encoding="UTF-8"?>
> <sbml xmlns="http://www.sbml.org/level2" level="2" version="1">
> <model id="single-tank">
> <listOfCompartments>
> <compartment id="WaterTank"/>
> </lsitOfCompartments>
> <listOfSpecies>
> <species id="V" compartment="WaterTank"/>
> </listOfSpecies>
> <listOfReactions>
> <reaction id="WaterLevel">
> <listOfProducts>
> <speciesReference species="V"/>
> </listOfProducts>
> <kineticLaw>
> <math xmlns="http://www.w3.org/1998/Math/MathML">
> <apply>
> <minus/>
> <ci> qi<ci>
> <apply>
> <times/>
> <ci> k1 <ci>
> <ci> V <ci>
> </apply>
> </apply>
> </math>
> <listOfParameters>
> <parameter id="qi"/>
> <parameter id="k1"/>
> </listOfParameters>
> </kineticLaw>
> </reaction>
> </listOfReactions>
> </model>
> </sbml>
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