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Nicolas Le Novere


Posts: 469
Registered:
October 2003
Re: SBML survey: should consistency of units be required? 15 Dec '07 16:03 Go to previous messageGo to previous message

Sven Sahle wrote:

> And Mike, you wrote that this specific model cannot be represented in
> sbml.

This is not what we said. What we said was that such a model, in the
present state of the specification, is invalid. It can be represented in
SBML, but it is rejected by libSBML (note that this is not the case with
the version in BioModels because some units are undefined, which turns
off the unit consistency check).

> But could it not be written completely in dimensionless values
> (dropping the inconsistent units, but keeping everything else)?

But that would not be the model described in the paper anymore ...

--
Nicolas LE NOVERE, Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223494521, Fax: 468, Mob: +44(0)7833147074 Skype:n.lenovere
http://www.ebi.ac.uk/~lenov, AIM: nlenovere, MSN: nlenovere@hotmail.com
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SubjectPosterDate
Read Message   SBML survey: should consistency of units be requir... Mike Hucka14 Dec '07 19:06
Read Message   Re: SBML survey: should consistency of units be re... Sven Sahle15 Dec '07 12:48
Read Message   Re: SBML survey: should consistency of units be re...  Nicolas Le Novere15 Dec '07 16:03
Read Message   Re: SBML survey: should consistency of units be re... Nicolas Le Novere15 Dec '07 16:03
Read Message   Re: SBML survey: should consistency of units be re... Sarah Keating16 Dec '07 09:59
Read Message   Re: SBML survey: should consistency of units be re... hugh.d.spence15 Dec '07 13:12
Read Message   Re: SBML survey: should consistency of units be re... Nicolas Le Novere15 Dec '07 16:07
Read Message   Re: SBML survey: should consistency of units be re... hugh.d.spence15 Dec '07 23:42
Read Message   Re: SBML survey: should consistency of units be re... Schaff16 Dec '07 06:13
Read Message   Re: SBML survey: should consistency of units be re... Robert Phair16 Dec '07 13:06
Read Message   Re: SBML survey: should consistency of units be re... Sven Sahle16 Dec '07 14:23
Read Message   Re: SBML survey: should consistency of units be re... hugh.d.spence17 Dec '07 03:42
Read Message   Re: SBML survey: should consistency of units be re... Robert Phair15 Dec '07 15:06
Read Message   Re: SBML survey: should consistency of units be re... Nicolas Le Novere15 Dec '07 16:14
Read Message   Re: SBML survey: should consistency of unitsbe req... Robert Phair15 Dec '07 16:59
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Schaff15 Dec '07 22:02
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Sven Sahle16 Dec '07 06:03
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Jordan Atlas16 Dec '07 10:23
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Jordan Atlas16 Dec '07 11:46
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Sven Sahle16 Dec '07 14:06
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Frank Bergmann16 Dec '07 14:36
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Stefan.Hoops17 Dec '07 14:11
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Nicolas Le Novere17 Dec '07 14:39
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Stefan.Hoops17 Dec '07 15:06
Read Message   Re: SBML survey: should consistency of units be re... Pedro Mendes18 Dec '07 01:05
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Nicolas Le Novere16 Dec '07 15:17
Read Message   Re: SBML survey: should consistency ofunitsbe requ... Schaff15 Dec '07 22:09
Read Message   Re: SBML survey: should consistency of units be re... Sven Sahle16 Dec '07 14:39
Read Message   Results of survey: should consistency of units be ... Mike Hucka01 Jan '08 19:18
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