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AuthorTopic
Frank Bergmann


Posts: 80
Registered:
August 2005
Re: Conversion between levels/versions of SBML 28 Jan '09 20:52 Go to previous messageGo to previous message

Hello all ...


>
>
> There are three options:
>
> 1) allow conversion regardless of the validity of either the source or
> the target
>
> 2) disallow conversion from a valid model to an invalid model but
> allow
> conversion of valid to valid and invalid to invalid models
>
> 3) only allow conversions of a valid model that will produce a valid
> model
>
> QUESTION: Which option seems preferable ?

I have gone to record about this before. So let me do it again, I
prefer to be able to convert between ALL levels and versions (and yes
that if it does not cause too much trouble even a conversion to 1.1
could be attempted). Translating this view into a number, this would
mean that I'd have to go with 1). Of course we don't like invalid
models and so all violations should be logged to the ListOfErrors to
be fixed later.

>
>
> Pre-empting the replies I know I will get (for all you "I don't care
> about units" people) there is of course the next question:
>
> QUESTION: if we go with option 3 should it be possible to ignore
> certain
> validation checks when determining the validity of the models ?
>

If indeed we go with option 3, then ... as you might have guessed from
my answer above ... yes please allow me to ignore some of the checks.

best
Frank

> Thanks
>
> Sarah, Akiya & Mike
>
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SubjectPosterDate
Read Message   Conversion between levels/versions of SBML Sarah Keating28 Jan '09 19:23
Read Message   Re: Conversion between levels/versions of SBML  Frank Bergmann28 Jan '09 20:52
Read Message   Re: Conversion between levels/versions of SBML Ralph Gauges28 Jan '09 22:43
Read Message   Re: Conversion between levels/versions of SBML Stefan.Hoops29 Jan '09 05:28
Read Message   Re: Conversion between levels/versions of SBML Sven Sahle29 Jan '09 13:00
Read Message   Re: Conversion between levels/versions of SBML Lucian Smith28 Jan '09 22:49
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