# Forums

 F.A.Q. Register Login Home
 SBML Discussions » sbml-discuss » Proposed addition to L3 coreShow: Today's Posts  :: Message Navigator| Subscribe to topic
AuthorTopic

Posts: 140
Location:
University of Utah
Registered:
May 2008
 Re: Proposed addition to L3 core 13 Sep '09 03:14 That's fine. I do think the other would be useful. Perhaps we can allow it to be an equation. Chris On Sep 12, 2009, at 11:45 AM, Nicolas Le novère wrote: > We can imagine anything. For instance cases of cooperativity where the > activity would be non-linear with the number of subunits . You could > indeed > use a pure number associated with your CI, CI2, CI3 etc. But you may > want > to attach a formula that computes this number based on a parameter. > For > instance, in a group "active", CI would be associated with k, CI2 > with k*n, > CI3 with k*n^2 etc. Then you can do parameter scans on n (or > whatever). > > This is becoming a bit complicated. I am not sure we are going to > agree > soon on what the id of a group represent. Since the group proposal > addresses the problem of grouping entity of the same type, your > problem can > be addressed by regular assignment rule, and that generalised > reactions are > not yet on the menu, I propose that we start with no numerical > semantic > behind the id, and see what happens, and how many tools support it > eventually. > > Chris J. Myers wrote: >> I don't believe a more complicated formula is ever needed at least >> for >> any purpose that I can imagine. >> >> Chris >> >> On Sep 12, 2009, at 2:49 AM, Michael Hucka wrote: >> >>>>>>>> On 9 Sep 2009, "Chris J. Myers" wrote: >>> myers> This is why I suggest adding a number to the group >>> myers> association. So you could have a group CIt with >>> myers> species CI and CI2. CI would be associated with >>> myers> group CIt with value 1 and CI2 would be associated >>> myers> with group CIt with value 2. >>> >>> But ... is it guaranteed that in all cases, it will be a >>> simple sum over products of number*id? Isn't it possible >>> that in some cases the combination needs a more complicated >>> formula? (The answer may be no -- I don't know.) >>> >>> MH >>> >>> ____________________________________________________________ >>> To manage your sbml-discuss list subscription, visit >>> https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss >>> >>> For a web interface to the sbml-discuss mailing list, visit >>> http://sbml.org/Forums/ >>> >>> For questions or feedback about the sbml-discuss list, >>> contact sbml-team@caltech.edu >> >> ____________________________________________________________ >> To manage your sbml-discuss list subscription, visit >> https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss >> >> For a web interface to the sbml-discuss mailing list, visit >> http://sbml.org/Forums/ >> >> For questions or feedback about the sbml-discuss list, >> contact sbml-team@caltech.edu > > > -- > Nicolas LE NOVERE, Computational Neurobiology, EMBL-EBI, Wellcome- > Trust > Genome Campus, Hinxton CB101SD UK, Mob:+447833147074, Tel: > +441223494521 > Fax:468,Skype:n.lenovere,AIM:nlenovere,MSN:nlenovere@hotmail.com(NOT > email) > http://www.ebi.ac.uk/~lenov/, http://www.ebi.ac.uk/compneur/ > > > ____________________________________________________________ > To manage your sbml-discuss list subscription, visit > https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss > > For a web interface to the sbml-discuss mailing list, visit > http://sbml.org/Forums/ > > For questions or feedback about the sbml-discuss list, > contact sbml-team@caltech.edu ____________________________________________________________ To manage your sbml-discuss list subscription, visit https://utils.its.caltech.edu/mailman/listinfo/sbml-discuss For a web interface to the sbml-discuss mailing list, visit http://sbml.org/Forums/ For questions or feedback about the sbml-discuss list, contact sbml-team@caltech.edu

SubjectPosterDate
Proposed addition to L3 core Robert Phair07 Sep '09 00:04
Re: Proposed addition to L3 core Nicolas Le Novere07 Sep '09 09:35
Re: Proposed addition to L3 core curoli07 Sep '09 11:38
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 00:15
Re: Proposed addition to L3 core curoli08 Sep '09 04:41
Re: Proposed addition to L3 core Stefan.Hoops08 Sep '09 07:28
Re: Proposed addition to L3 core curoli08 Sep '09 08:48
Re: Proposed addition to L3 core Stefan.Hoops08 Sep '09 09:22
Re: Proposed addition to L3 core curoli08 Sep '09 10:31
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 09:30
Re: Proposed addition to L3 core curoli08 Sep '09 10:39
Re: Proposed addition to L3 core Robert Phair09 Sep '09 01:02
Re: Proposed addition to L3 core Nicolas Le Novere09 Sep '09 05:14
Re: Proposed addition to L3 core curoli09 Sep '09 06:54
Re: Proposed addition to L3 core Pedro Mendes09 Sep '09 08:09
Re: Proposed addition to L3 core Mike Hucka09 Sep '09 12:41
Re: Proposed addition to L3 core Pedro Mendes09 Sep '09 14:52
Re: Proposed addition to L3 core Mike Hucka10 Sep '09 00:13
Re: Proposed addition to L3 core curoli10 Sep '09 05:25
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 09:12
Re: Proposed addition to L3 core myers08 Sep '09 09:41
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 15:34
Re: Proposed addition to L3 core Mike Hucka09 Sep '09 12:13
Re: Proposed addition to L3 core hsauro09 Sep '09 14:07
Re: Proposed addition to L3 core myers09 Sep '09 15:30
Re: Proposed addition to L3 core mblinov09 Sep '09 17:34
Re: Proposed addition to L3 core myers09 Sep '09 18:16
Re: Proposed addition to L3 core eric.minch09 Sep '09 20:04
Re: Proposed addition to L3 core Nicolas Le Novere10 Sep '09 02:02
Re: Proposed addition to L3 core Mike Hucka12 Sep '09 01:43
Re: Proposed addition to L3 core Nicolas Le Novere12 Sep '09 08:37
Re: Proposed addition to L3 core Mike Hucka17 Sep '09 21:59
Re: Proposed addition to L3 core Mike Hucka12 Sep '09 01:49
Re: Proposed addition to L3 core myers12 Sep '09 06:30
Re: Proposed addition to L3 core Nicolas Le Novere12 Sep '09 10:45
Re: Proposed addition to L3 core Mike Hucka12 Sep '09 11:57
Re: Proposed addition to L3 core  myers13 Sep '09 03:14
Re: Proposed addition to L3 core curoli08 Sep '09 09:46
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 15:41
Re: Proposed addition to L3 core curoli09 Sep '09 04:29
Re: Proposed addition to L3 core Mike Hucka08 Sep '09 22:54
Re: Proposed addition to L3 core curoli09 Sep '09 04:17
Re: Proposed addition to L3 core Ion08 Sep '09 09:21
Re: Proposed addition to L3 core curoli08 Sep '09 10:41
Re: Proposed addition to L3 core Schaff08 Sep '09 09:30
Re: Proposed addition to L3 core Nicolas Le Novere08 Sep '09 15:29
L3 core vs. packages Lucian Smith09 Sep '09 00:10
Re: L3 core vs. packages Nicolas Le Novere09 Sep '09 02:02
Re: L3 core vs. packages Mike Hucka09 Sep '09 12:06
Re: Proposed addition to L3 core curoli07 Sep '09 09:48
Re: Proposed addition to L3 core Nicolas Le Novere07 Sep '09 12:45
Re: Proposed addition to L3 core curoli07 Sep '09 14:31
 Previous Topic: Reactome Pathway Database User Survey Next Topic: (Fwd) New BioModels.net qualifiers
 Go to forum: SBML Discussions    sbml-discuss    sbml-interoperability    sbml-announce    libsbml-development    jsbml-development
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.