Forums

* Allyson Lister <a.l.lister@newcastle.ac.uk> [2009-09-10 17:00] writes:
> Hi all,
>
> I realize that there is no inherent order of the various MIRIAM annotations
> in an <annotation> element, and I certainly don't think there should be any
> such thing.
>
> However, saying that, I'm trying to do a diff between two SBML files, and
> I'm running into trouble when comparing the MIRIAM annotations. Essentially,
> the ordering in the file as downloaded from BioModels seems to be different
> than the ordering of the messed-with version of the SBML file that I created
> and am trying to compare against.

Hrm. I think if I was in your situation, I'd write a perl/python script
to (say) alphabetize the MIRIAM annotations on both files, then diff that
output.

However, on a whim I googled 'xmldiff' and discovered

http://www.logilab.org/859

and

http://freshmeat.net/projects/xmldiff/

so maybe those will work (if indeed they're not the same thing)?

-Lucian
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