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Marine Dumousseau


Posts: 9
Registered:
October 2009
SBML Annotations 13 Nov '09 03:12 Go to previous message

Hi all,

As the annotation element can contain other annotations than RDF, I
think we should create an Annotation class which contains the list of
CVTerms as well as a String storing the other annotations. For the
model, Annotation could be extended by ModelAnnotation which contains a
ModelHistory instance in addition to the other instance variables of
Annotation.

Instead of having a list of CVTerms in each SBML component classes and a
ModelHistory instance directly in Model, all the component classes
should contain an instance of Annotation (ModelAnnotation for Model).

However I think we should keep the methods getListOfCVTerms,
getCVTerm(int i), etc. for each SBML component classes (and
getModelHistory() for Model) to be close to libSBML.

I put a tracker issue for that on the sourceforge project.

Regards,

Marine
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SubjectPosterDate
Read Message   SBML Annotations  Marine Dumousseau13 Nov '09 03:12
Read Message   Re: SBML Annotations Sarah Keating13 Nov '09 05:05
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