Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » sbml-interoperability » library conflicts under java
Show: Today's Posts  :: Message Navigator
| Subscribe to topic 
Return to the default flat view Create a new topic Submit Reply
AuthorTopic
Lucian Smith


Posts: 183
Registered:
July 2008
Re: library conflicts under java 12 Feb '10 11:13 Go to previous messageGo to previous message

* Akiya Jouraku <jouraku@bio.keio.ac.jp> [2010-02-12 07:57] writes:
> Lucian Smith <lpsmith@spod-central.org> wrote
> > * Akiya Jouraku <jouraku@bio.keio.ac.jp> [2010-02-11 08:25] writes:
> > > (4) Is JSim compiled on the same host?
> >
> > Yes. It is possible that there could be some flag used for a library here
> > that is somehow incompatible with a flag used to compile the JSim
> > libraries. JSim was developed on RedHat, and I had to extensively modify
> > the Makefile system to get it to compile on Ubuntu without really knowing
> > what I was doing, but I don't really know where to start.
>
> I'm not sure if this is the case, but could you check if -fno-strict-aliasing
> option is used when compiling JSim by gcc?

No, looks like it's not there. Actually, one of the libraries that causes
the problem is 'natmath', and it contains exactly one source file, which
is compiled in the following way:

/usr/bin/gcc -c -I. -I /home/lpsmith/JSim/src//JSim/nonJava/include/linux -I /home/lpsmith/JSim/src//JSim/nonJava/include -g -O2 -fpic natmath.c
/usr/bin/ld natmath.o -shared /usr/lib/libgfortran.so.3 /usr/lib/libgccpp.so.1 -lc -o libnatmath.so

-Lucian
____________________________________________________________
To manage your sbml-interoperability list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-interoperability

For a web interface to the sbml-interoperability mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the sbml-interoperability list,
contact sbml-team@caltech.edu

      

SubjectPosterDate
Read Message   library conflicts under java Lucian Smith10 Feb '10 12:14
Read Message   Re: library conflicts under java ajouraku11 Feb '10 00:13
Read Message   Re: library conflicts under java Lucian Smith11 Feb '10 10:45
Read Message   Re: library conflicts under java ajouraku11 Feb '10 23:48
Read Message   Re: library conflicts under java  Lucian Smith12 Feb '10 11:13
Read Message   Re: library conflicts under java ajouraku14 Feb '10 02:14
Read Message   Re: library conflicts under java Lucian Smith16 Feb '10 11:06
Previous Topic:Re: [sbml-discuss] Problem running SBMLEditor on Mac OS X
Next Topic:unsetCharge
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.