| Author | Topic |
Posts: 183
Registered: July 2008
|
|
Re: library conflicts under java
|
12 Feb '10 11:13

|
 |
|
* Akiya Jouraku <jouraku@bio.keio.ac.jp> [2010-02-12 07:57] writes:
> Lucian Smith <lpsmith@spod-central.org> wrote
> > * Akiya Jouraku <jouraku@bio.keio.ac.jp> [2010-02-11 08:25] writes:
> > > (4) Is JSim compiled on the same host?
> >
> > Yes. It is possible that there could be some flag used for a library here
> > that is somehow incompatible with a flag used to compile the JSim
> > libraries. JSim was developed on RedHat, and I had to extensively modify
> > the Makefile system to get it to compile on Ubuntu without really knowing
> > what I was doing, but I don't really know where to start.
>
> I'm not sure if this is the case, but could you check if -fno-strict-aliasing
> option is used when compiling JSim by gcc?
No, looks like it's not there. Actually, one of the libraries that causes
the problem is 'natmath', and it contains exactly one source file, which
is compiled in the following way:
/usr/bin/gcc -c -I. -I /home/lpsmith/JSim/src//JSim/nonJava/include/linux -I /home/lpsmith/JSim/src//JSim/nonJava/include -g -O2 -fpic natmath.c
/usr/bin/ld natmath.o -shared /usr/lib/libgfortran.so.3 /usr/lib/libgccpp.so.1 -lc -o libnatmath.so
-Lucian
____________________________________________________________
To manage your sbml-interoperability list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/sbml-interoperability
For a web interface to the sbml-interoperability mailing list, visit
http://sbml.org/Forums/
For questions or feedback about the sbml-interoperability list,
contact sbml-team@caltech.edu
|
|
|