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AuthorTopic
Camille Laibe


Posts: 27
Registered:
January 2008
Re: model pointers 26 Mar '10 10:04 Go to previous messageGo to previous message

Hi Oliver,

> Perhaps we could adopt a new MIRIAM type biomodels.element to build
> new URNs of the form:
>
> urn:miriam:biomodels.element:myOldModel.met2

Does that mean that we would have a specific URN scheme only for the
data type "BioModels Datatabase" in MIRIAM Resources?
If the answer is "no", this proposal (as well as your "xpath" one) is
possibly not usable, as some identifiers may use "." and therefore one
could not know when the "element" part starts.

> Alternatively, we could adopt a datatype biomodels.species. We could
> also extend this into a larger framework of contained types, say, for
> every MIRIAM type XXX referring to models, XXX.element refers to
> elements of these models (or XXX.species to a species in that model).

Let's not forget that MIRIAM URIs/URNs/identifiers (whatever people like
to call them) are not limited to identify models, and when they do
identify some, these are not necessary SBML ones (where "species" has a
meaning).

Best regards.

--
Camille Laibe
BioModels.net Coordinator
European Bioinformatics Institute, Cambridge (UK)
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SubjectPosterDate
Read Message   model pointers kieransmallbone24 Mar '10 13:59
Read Message   Re: model pointers fbergman25 Mar '10 16:10
Read Message   Re: model pointers juty26 Mar '10 03:10
Read Message   Re: model pointers kieransmallbone26 Mar '10 05:52
Read Message   Re: model pointers curoli26 Mar '10 07:08
Read Message   Re: model pointers  Camille Laibe26 Mar '10 10:04
Read Message   Re: model pointers curoli26 Mar '10 12:32
Read Message   Re: model pointers Camille Laibe26 Mar '10 10:00
Read Message   Re: model pointers kieransmallbone26 Mar '10 11:28
Read Message   Re: model pointers Neil Swainston29 Mar '10 03:51
Read Message   Re: model pointers Dagmar Waltemath29 Mar '10 05:31
Read Message   Re: model pointers kieransmallbone28 Sep '10 08:20
Read Message   Re: model pointers Stefan.Hoops28 Sep '10 08:58
Read Message   Re: model pointers Camille Laibe28 Sep '10 12:51
Read Message   Re: model pointers curoli26 Mar '10 07:25
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