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Posts: 27
Registered: January 2008
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Re: model pointers
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26 Mar '10 10:04

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Hi Oliver,
> Perhaps we could adopt a new MIRIAM type biomodels.element to build
> new URNs of the form:
>
> urn:miriam:biomodels.element:myOldModel.met2
Does that mean that we would have a specific URN scheme only for the
data type "BioModels Datatabase" in MIRIAM Resources?
If the answer is "no", this proposal (as well as your "xpath" one) is
possibly not usable, as some identifiers may use "." and therefore one
could not know when the "element" part starts.
> Alternatively, we could adopt a datatype biomodels.species. We could
> also extend this into a larger framework of contained types, say, for
> every MIRIAM type XXX referring to models, XXX.element refers to
> elements of these models (or XXX.species to a species in that model).
Let's not forget that MIRIAM URIs/URNs/identifiers (whatever people like
to call them) are not limited to identify models, and when they do
identify some, these are not necessary SBML ones (where "species" has a
meaning).
Best regards.
--
Camille Laibe
BioModels.net Coordinator
European Bioinformatics Institute, Cambridge (UK)
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