Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » sbml-interoperability » SBML Toolbox and Matlab
Show: Today's Posts  :: Message Navigator
| Subscribe to topic 
Return to the default flat view Create a new topic Submit Reply
AuthorTopic
Sarah Keating


Posts: 417
Registered:
May 2004
Re: SBML Toolbox and Matlab 10 Jun '10 00:53 Go to previous message

Hi

Sorry for the delay in replying and thanks for your interest in SBML and
the SBMLToolbox.

Unfortunately the SBMLToolbox does not deal with varying parameters.

However, in simple cases it is possible to simulate the model by
"turning the parameters into species". I attached a matlab script that
will take the SBML_MATLAB structure for a model and produce a new
structure where the parameters are now species. This can be simulated
using SBMLToolbox.

I assume you are using the Westermark model from BioModels database - in
which case it should work for this model.

Let me know if I can be of any more help.

Sarah


a.calore88 wrote:
> Hi guys, I'm a student of the University of Padova in Italy who, for academic purpose, is using the toolbox with the support of Matlab.
> As a new user, I have some troubles: I'm working in particular with the Westermark model and i need to use the WriteODEFunction function in order to convert the model in a form usable with ode solvers but i noticed there are some not constant parameters which don't let me use this function; so, when there are variables parameters, what I should do?
> Thank you all for the interest.
> ____________________________________________________________
> To manage your sbml-interoperability list subscription, visit
> https://utils.its.caltech.edu/mailman/listinfo/sbml-interoperability
>
> For a web interface to the sbml-interoperability mailing list, visit
> http://sbml.org/Forums/
>
> For questions or feedback about the sbml-interoperability list,
> contact sbml-team@caltech.edu
>


      

SubjectPosterDate
Read Message   SBML Toolbox and Matlab a.calore8808 Jun '10 00:23
Read Message   Re: SBML Toolbox and Matlab  Sarah Keating10 Jun '10 00:53
Previous Topic:libSBML perl bindings
Next Topic:Bifurcation analysis
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.