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Posts: 273
Registered: June 2006
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Re: Problems when parsing an SBML document
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14 Dec '10 05:37
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>>>> http://docs.u003f.com/murabito_normal.xml using JSBML. It works, but
>>> There is also this warning :
>>>
>>> WARN (SBMLCoreParser.java:561) - No UnitDefinition matches the unitsID
>>> 'dimensionless'of the parameter Keqv5.
>> Yes,
>>
>> I will. Please give me some time.
>>
> No rush. But I think, it is only missing from the predefinedUnit list in
> the Model.
Hello everybody,
This problem is now solved as well. The method isSetUnitsInstance() in
QuantityWithDefineUnit did not return true if the unitsID refered to a
simple base unit kind, but only if the associated model contained a
UnitDefinition with the given ID. Now it also returns true if we can
directly create an instance of Unit for the given unitsID in the
element's Level/Version combination, i.e., if an instance of Units can
be addressed by the unitsID. The warning then dissapears.
Cheers
Andreas
--
Dipl.-Bioinform. Andreas Dräger
Eberhard Karls University Tübingen
Center for Bioinformatics (ZBIT)
Sand 1
72076 Tübingen
Germany
Phone: +49-7071-29-70436
Fax: +49-7071-29-5091
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