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Andreas Dräger


Posts: 273
Registered:
June 2006
Re: Problems when parsing an SBML document 14 Dec '10 05:37 Go to previous message

>>>> http://docs.u003f.com/murabito_normal.xml using JSBML. It works, but
>>> There is also this warning :
>>>
>>> WARN (SBMLCoreParser.java:561) - No UnitDefinition matches the unitsID
>>> 'dimensionless'of the parameter Keqv5.
>> Yes,
>>
>> I will. Please give me some time.
>>
> No rush. But I think, it is only missing from the predefinedUnit list in
> the Model.

Hello everybody,

This problem is now solved as well. The method isSetUnitsInstance() in
QuantityWithDefineUnit did not return true if the unitsID refered to a
simple base unit kind, but only if the associated model contained a
UnitDefinition with the given ID. Now it also returns true if we can
directly create an instance of Unit for the given unitsID in the
element's Level/Version combination, i.e., if an instance of Units can
be addressed by the unitsID. The warning then dissapears.

Cheers
Andreas

--
Dipl.-Bioinform. Andreas Dräger
Eberhard Karls University Tübingen
Center for Bioinformatics (ZBIT)
Sand 1
72076 Tübingen
Germany

Phone: +49-7071-29-70436
Fax: +49-7071-29-5091
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SubjectPosterDate
Read Message   Problems when parsing an SBML document Andreas Dräger30 Nov '10 00:54
Read Message   Re: Problems when parsing an SBML document rodrigue30 Nov '10 01:50
Read Message   Re: Problems when parsing an SBML document rodrigue30 Nov '10 02:37
Read Message   Re: Problems when parsing an SBML document rodrigue30 Nov '10 03:08
Read Message   Re: [libsbml-team] Problems when parsing an SBML d... Sarah Keating02 Dec '10 04:12
Read Message   Re: Problems when parsing an SBML document rodrigue30 Nov '10 02:43
Read Message   Re: Problems when parsing an SBML document Andreas Dräger30 Nov '10 02:44
Read Message   Re: Problems when parsing an SBML document rodrigue30 Nov '10 02:48
Read Message   Re: Problems when parsing an SBML document  Andreas Dräger14 Dec '10 05:37
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