Location: Cambridge UK
Registered: February 2005
SBO parsing and biojava
09 Dec '10 08:23
I tried to use the SBO class to display SBO term name and just notice
that the OboParser from biojava
seems to do some weird things.
First which version of biojava did you add in the jsbml lib folder ? Is
it a trimmed down jar, the official jar look a lot bigger ?
Then the Term class strangely had no visible id/identifier getter or
setter, the Term.name seem to contain a mix of the id + any is_a
relationship and the
Term.description seems to be random.
If the name is used to identify a Term, I thing all the methods using
the biojava ontology will not work properly.
I did not made any real test until now, Andreas did you tested the
getTerm and isChildOf methods of the jsbml SBO class ?