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Posts: 27
Registered:
January 2008
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Re: SBO parsing and biojava
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09 Dec '10 09:14
 
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> However, in my opinion it would actually be very nice if people have the
> chance to access the MathML part in the ontology via our SBO class.
Yes, indeed.
However, the OBO format is fairly limited, hence the MathML in the
definition...
Except having a bad hack which detect the MathML in the def and extract
it, I don't think we/you can achieve that in a standard way using OBO.
You might want to use the XML export for that. But the drawback is you
would need to develop a parser specific for it, as the format is not
standardised.
If I can do anything to help you from the SBO side, please let me know.
--
Camille Laibe
BioModels.net Coordinator
European Bioinformatics Institute, Cambridge (UK)
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