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Hi Sarah!

Thank you very much for your very prompt reply.

I gave it a try today, and now am stuck in a different place I'm pretty good at this, aren't I!?

Today I tried libSBML 4.2.0 (latest stable release?) and SBMLToolbox 3.1.0 (as you recommended)

I added the MATLAB's mex to my path,
and set the CFLAGS and LDFLAGS as described in the readme file.

My first attempt gives the error

Warning: You are using gcc version "4.4.4-14ubuntu5)". The version
currently supported with MEX is "4.3.4".
For a list of currently supported compilers see:
http://www.mathworks.com/support/compilers/current_release/

So, I went to d/l gcc 4.3.5 (I couldn't find 4.3.4), and tried it again.

The gcc warning is now replaced by:

mex -I/usr/local/include -I/usr/local/include -L/usr/local/lib -L/usr/local/lib OutputSBML.c -lsbml
/usr/bin/ld: cannot find -lstdc++
collect2: ld returned 1 exit status

mex: link of ' "OutputSBML.mexa64"' failed.

make: *** [OutputSBML.mexglx] Error 1


I saw in a different thread that SBMLToolbox 3.0.0 is not compatible with 4.0.0? Is it that I only need to change the version that I install?

Thanks again!
Celine