Forums

Nicolas Rodriguez wrote:
> Dinasarapu, Ashok reddy wrote:
>
>> Hi Andreas,
>>
>> I am sending you the file that I have to parse to get the required data.
>>
>>
>>
> The problem is that we use the class LocalParameter, for all level and
> version of SBML, for the local parameter of a reaction.
> And this class as no constant attribute, like in SBML level 3.
>

However, the constant attribute on parameter was valid for earlier
versions of SBML and
was always set to true for local parameter.

> One simple fix is to add a check for the constant attribute in the
> readAttribute method of LocalParameter and return true there to tell
> the main parser that the attribute is recognized. We can check there
> that the value is always true by the way, and send a warning if it is not.
>
> One question is, do we want to write back the constant attribute to keep
> the file as it was ?? If yes, we probably need to add a class attribute
> to tell us if the constantAttribute was set and then add it in the
> writeAttribute method.
>
> What do people thing about that ?
>
> Nico
>
>
>
>> From: Dinasarapu, Ashok reddy
>> Sent: Wednesday, March 30, 2011 12:29 PM
>> To: 'jsbml-development@caltech.edu'
>> Subject: jsbml/parsing errors
>>
>> Hi,
>>
>> I am trying parse/read SBML data file from BRENDA.
>>
>> There are many errors like the following, while parsing.
>>
>> - The attribute constant on the element parameter is not recognize. Please, check the SBML specifications
>> - The attribute constant on the element parameter is not recognize. Please, check the SBML specifications
>> - The attribute constant on the element parameter is not recognize. Please, check the SBML specifications
>> - The attribute constant on the element parameter is not recognize. Please, check the SBML specifications
>> - The attribute constant on the element parameter is not recognize. Please, check the SBML specifications
>> ......
>>
>> Is there any wrong with the data file or library!.
>>
>> Regards,
>> Ashok
>>
>> ------------------------------------------------------------------------
>>
>> ____________________________________________________________
>> To manage your jsbml-development list subscription, visit
>> https://utils.its.caltech.edu/mailman/listinfo/jsbml-development
>>
>> For a web interface to the jsbml-development mailing list, visit
>> http://sbml.org/Forums/
>>
>> For questions or feedback about the jsbml-development list,
>> contact sbml-team@caltech.edu
>>
>
> ____________________________________________________________
> To manage your jsbml-development list subscription, visit
> https://utils.its.caltech.edu/mailman/listinfo/jsbml-development
>
> For a web interface to the jsbml-development mailing list, visit
> http://sbml.org/Forums/
>
> For questions or feedback about the jsbml-development list,
> contact sbml-team@caltech.edu
>

____________________________________________________________
To manage your jsbml-development list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/jsbml-development

For a web interface to the jsbml-development mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the jsbml-development list,
contact sbml-team@caltech.edu