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Posts: 14
Location:
Edinburgh, UK
Registered:
May 2008
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Re: New version of SBML Test Suite available
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07 Jun '11 01:43
 
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Hello,
That's great to have a new test suite - and good to see SED-ML being used too!
I had a quick look at the SED-ML files to make sure that the jlibsedml library could read them in OK. Nearly all were fine, but for some I get the error messages indicating two elements have the same ID ( see below). In 954, for example, a variable and a DataGenerator are both identified as 'P11', which might confuse some SED-ML software, as identifiers are supposed to be globally unique.
Also, on a slightly more pedantic note ( which will be addressed in the next SEDML release), the l1v1 SEDML schema imposes an ordering on outputs (plot2D, plot3D, Report), that at least some of these examples don't follow. This doesn't affect the meaning of the document at all, but any software that uses the SED-ML schema to check documents might complain about a schema violation.
Cheers
Richard
List of files with duplicated ID values
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00954-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
P21 for element [P21] defined already.
P31 for element [P31] defined already.
00955-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
P31 for element [P31] defined already.
P41 for element [P41] defined already.
00956-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
P21 for element [P21] defined already.
P31 for element [P31] defined already.
00957-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
00958-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
00959-sbml-l3v1-sedml.xml
P11 for element [P11] defined already.
P21 for element [P21] defined already.
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