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Mike Hucka


Posts: 719
Registered:
October 2003
Re: type of stoichiometry 08 Feb '05 16:48 Go to previous messageGo to previous message

Not all models are about elementary reactions :-).
Composite reactions can result in non-integer
stoichiometries.

You may then ask, why not multiply out common denominators
and generate integer stoichiometries? This was a topic of
some discussion at the SBML Forum meeting in Ft. Lauderdale.
The conclusion was that the resulting numbers don't
necessarily mean the same thing, qualitatively.

MH

--
Mike Hucka, Ph.D. mhucka@caltech.edu
Senior Research Fellow
Control and Dynamical Systems 107-81 tel: +1.626.395.6911
Caltech, Pasadena, CA 91125, USA fax: +1.702.554.3067


      

SubjectPosterDate
Read Message   SBML Semantic Test Suite - Beta Release Andrew Finney19 Oct '04 07:59
Read Message   Re: SBML Semantic Test Suite - Beta Release rmachne25 Oct '04 09:07
Read Message   SBML Semantic Test Suite - results for BioUML work... Fedor Kolpakov10 Jan '05 03:16
Read Message   RE: SBML Semantic Test Suite - results for BioUML ... Andrew Finney10 Jan '05 03:41
Read Message   Re: RE: SBML Semantic Test Suite - results for Bio... Fedor Kolpakov10 Jan '05 05:59
Read Message   RE: Re: RE: SBML Semantic Test Suite - results for... Herbert Sauro10 Jan '05 08:50
Read Message   Re: Re: RE: SBML Semantic Test Suite - results fo... rmachne10 Jan '05 13:17
Read Message   Re: RE: SBML Semantic Test Suite - BioUML passed 1... Fedor Kolpakov14 Jan '05 08:20
Read Message   Re: SBML Semantic Test Suite - results for BioUML... Mike Hucka03 Feb '05 18:57
Read Message   Re: SBML Semantic Test Suite - results for BioUML... Fedor Kolpakov07 Feb '05 06:43
Read Message   type of stoichiometry Hiroyuki Kuwahara08 Feb '05 14:51
Read Message   Re: type of stoichiometry  Mike Hucka08 Feb '05 16:48
Read Message   Re: type of stoichiometry Hiroyuki Kuwahara08 Feb '05 16:59
Read Message   Re: type of stoichiometry Nicolas Le Novere09 Feb '05 00:32
Read Message   Re: type of stoichiometry zucker08 Feb '05 18:21
Read Message   Re: type of stoichiometry Pedro Mendes09 Feb '05 06:20
Read Message   Re: type of stoichiometry Hiroyuki Kuwahara09 Feb '05 11:34
Read Message   Re: type of stoichiometry Darren J Wilkinson09 Feb '05 12:48
Read Message   Re: type of stoichiometry Ed Frank09 Feb '05 15:56
Read Message   Re: type of stoichiometry Howard09 Feb '05 21:22
Read Message   Re: type of stoichiometry Hiroyuki Kuwahara10 Feb '05 07:23
Read Message   Re: type of stoichiometry Darren J Wilkinson10 Feb '05 13:05
Read Message   Re: type of stoichiometry Hiroyuki Kuwahara10 Feb '05 14:52
Read Message   Re: type of stoichiometry Darren J Wilkinson10 Feb '05 23:30
Read Message   Re: type of stoichiometry Howard10 Feb '05 17:27
Read Message   Re: type of stoichiometry Darren J Wilkinson10 Feb '05 13:52
Read Message   Re: Hybrid stochastic methods Howard10 Feb '05 17:39
Read Message   Re: type of stoichiometry Pedro Mendes09 Feb '05 15:49
Read Message   Re: type of stoichiometry Hiro Kuwahara09 Feb '05 16:56
Read Message   Re: type of stoichiometry J.Weimar09 Feb '05 00:06
Read Message   RE: type of stoichiometry Herbert Sauro09 Feb '05 06:53
Read Message   RE: type of stoichiometry Andrew Finney09 Feb '05 07:34
Read Message   RE: type of stoichiometry hugh.d.spence09 Feb '05 08:06
Read Message   RE: type of stoichiometry Herbert Sauro09 Feb '05 22:10
Read Message   RE: type of stoichiometry Herbert Sauro09 Feb '05 22:12
Read Message   RE: type of stoichiometry Herbert Sauro09 Feb '05 22:13
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