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I always thought that the local parameters took preference over everything else.

So in this case the values are {cyt, nuc} = {0.1, 0.01}

Colin
>-----Original Message-----
>From: sbml-discuss-bounces@caltech.edu
>[mailto:sbml-discuss-bounces@caltech.edu] On Behalf Of Nicolas
>Le Novere
>Sent: 29 April 2005 10:06
>To: sbml-discuss@caltech.edu
>Subject: [sbml-discuss] parameters and namespaces
>
>
>In the following fake (dumb) code, how can I interpret the
>ratelaw, i.e. what are the values of "cyt" and "nuc"?
>
><listOfCompartments>
> <compartment id="cyt" size="5e-15"/>
> <compartment id="nuc" size="e-15"/>
></listOfCompartments>
><listOfSpecies>
> <species id="A" compartment="cyt" initialConcentration="0.5" />
> <species id="B" compartment="nuc" initialConcentration="0"
>/> </listOfSpecies> <listOfReactions>
> <reaction id="transport">
> <listOfReactants>
> <reactant speciesReference="A" />
> </listOfReactants>
> <listOfProducts>
> <product speciesReference="B">
> </listOfProducts>
> <kineticLaw>
> <math>
> <apply>
> <minus/>
> <apply>
> <times/>
> <ci>nuc</ci>
> <ci>A</ci>
> <ci>cyt</ci>
> </apply>
> <apply>
> <times/>
> <ci>cyt</ci>
> <ci>B</ci>
> <ci>nuc</ci>
> </apply>
> </apply>
> </math>
> <listOfParameters>
> <parameter id="cyt" value="0.1" />
> <parameter id="nuc" value="0.01" />
> </listOfParameters>
> </kineticLaw>
> </reaction>
></listOfReactions>
>
>--
>Nicolas LE NOVÈRE, Computational Neurobiology,
>EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge,
>CB10 1SD, UK
>Tel: +44(0)1223 494 521, Fax: +44(0)1223 494 468, Mob:
>+33(0)689218676
>http://www.ebi.ac.uk/~lenov AIM screen name:
>nlenovere
>
>
>