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ginkel


Posts: 46
Registered:
August 2004
Re: parameters and namespaces 10 May '05 23:53 Go to previous messageGo to previous message

Andrew Finney wrote:
>>If the namespaces of
>>parameters and compartments are separated in the modeling environment,
>>which is the case in *every* software I'm aware of, the
>>problem occur not in the model, but in the SBML encoding of the model.
>
> Please give examples of these software packages.

Hmm, Promot has *no* separate namespaces for different classes (species,
compartments, parameters), but hierarchical, encapsulated namespaces
(not only for compartments, as in ecell).

Martin

--
+-[Martin Ginkel]-------------[mailto:mginkel(at)mpi-magdeburg.mpg.de]-+
| MPI Magdeburg, Zi S2.09 Sandtorstr. 1, D-39106 Magdeburg, Germany |
| $> man woman Segmentation fault (core dumped) |
| |
+-[tel/fax: +49 391 6110 482/529]----[http://www.mpi-magdeburg.mpg.de]-+

      

SubjectPosterDate
Read Message   parameters and namespaces Nicolas Le Novere29 Apr '05 02:05
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:10
Read Message   RE: parameters and namespaces Nicolas Le Novere29 Apr '05 02:18
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:25
Read Message   RE: parameters and namespaces Nicolas Le Novere29 Apr '05 02:33
Read Message   RE: parameters and namespaces hugh.d.spence29 Apr '05 03:22
Read Message   RE: parameters and namespaces Colin Gillespie29 Apr '05 02:40
Read Message   Re: parameters and namespaces Stefan Hoops29 Apr '05 04:09
Read Message   Re: parameters and namespaces Nicolas Le Novere29 Apr '05 09:52
Read Message   Re: parameters and namespaces Ben Bornstein29 Apr '05 12:02
Read Message   Re: parameters and namespaces Nicolas Le Novere29 Apr '05 14:51
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:38
Read Message   Re: parameters and namespaces Nicolas Le Novere30 Apr '05 07:30
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 02:43
Read Message   RE: parameters and namespaces Nicolas Le Novere07 May '05 14:44
Read Message   RE: parameters and namespaces Mike Hucka07 May '05 18:44
Read Message   Re: parameters and namespaces Stefan Hoops29 Apr '05 12:12
Read Message   Re: parameters and namespaces JWagner29 Apr '05 14:09
Read Message   Re: parameters and namespaces Darren J Wilkinson29 Apr '05 14:38
Read Message   Re: parameters and namespaces Nicolas Le Novere29 Apr '05 14:47
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:35
Read Message   Re: parameters and namespaces JWagner29 Apr '05 09:00
Read Message   RE: parameters and namespaces Herbert Sauro29 Apr '05 15:29
Read Message   Re: parameters and namespaces Ben Bornstein29 Apr '05 17:51
Read Message   Re: parameters and namespaces Mike Hucka29 Apr '05 17:32
Read Message   Re: parameters and namespaces Nicolas Le Novere30 Apr '05 07:26
Read Message   Re: parameters and namespaces Mike Hucka01 May '05 01:31
Read Message   Re: parameters and namespaces Nicolas Le Novere01 May '05 10:04
Read Message   Re: parameters and namespaces ginkel02 May '05 01:40
Read Message   Re: parameters and namespaces Pedro Mendes02 May '05 06:55
Read Message   Re: parameters and namespaces Mike Hucka03 May '05 09:18
Read Message   Re: parameters and namespaces Mike Hucka03 May '05 09:17
Read Message   RE: parameters and namespaces Andrew Finney12 May '05 11:42
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 20:10
Read Message   RE: parameters and namespaces Andrew Finney07 May '05 19:20
Read Message   RE: parameters and namespaces Kouichi Takahashi10 May '05 15:47
Read Message   Re: parameters and namespaces Stefan Hoops11 May '05 04:20
Read Message   RE: parameters and namespaces Mike Hucka16 May '05 20:36
Read Message   RE: parameters and namespaces R Phair16 May '05 21:34
Read Message   RE: parameters and namespaces Mike Hucka17 May '05 04:04
Read Message   Re: parameters and namespaces Kouichi Takahashi17 May '05 14:31
Read Message   Re: parameters and namespaces Upinder Singh Bhalla17 May '05 19:22
Read Message   Re: parameters and namespaces Nicolas Le Novere18 May '05 09:33
Read Message   Re: parameters and namespaces Kouichi Takahashi18 May '05 13:31
Read Message   Re: parameters and namespaces Kouichi Takahashi18 May '05 16:08
Read Message   Re: parameters and namespaces Kouichi Takahashi17 May '05 15:47
Read Message   RE: parameters and namespaces Andrew Finney22 May '05 05:38
Read Message   Regarding compartments emek23 May '05 08:23
Read Message   Re: Regarding compartments Upinder Singh Bhalla23 May '05 19:22
Read Message   Re: Regarding compartments ginkel24 May '05 00:35
Read Message   Re: Regarding compartments Upinder Singh Bhalla24 May '05 19:30
Read Message   Re: Regarding compartments Darren J Wilkinson24 May '05 23:05
Read Message   Re: Regarding compartments Nicolas Le Novere24 May '05 01:00
Read Message   Re: Regarding compartments emek24 May '05 01:31
Read Message   Re: Regarding compartments Nicolas Le Novere24 May '05 14:04
Read Message   Re: Regarding compartments marcoxa24 May '05 05:19
Read Message   Re: Regarding compartments Pedro Mendes24 May '05 08:30
Read Message   Re: Regarding compartments Howard24 May '05 09:24
Read Message   Re: Regarding compartments Greg Blumenthal24 May '05 16:37
Read Message   Re: Regarding compartments Mike Hucka24 May '05 23:25
Read Message   Re: parameters and namespaces  ginkel10 May '05 23:53
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 00:36
Read Message   Re: parameters and namespaces Sven Sahle13 May '05 05:14
Read Message   Re: parameters and namespaces Nicolas Le Novere03 May '05 11:19
Read Message   RE: parameters and namespaces Herbert Sauro05 May '05 17:52
Read Message   Re: parameters and namespaces Ben Bornstein05 May '05 20:08
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 00:39
Read Message   [ANN] CL-SBML new release marcoxa12 May '05 12:26
Read Message   Re: parameters and namespaces Kouichi Takahashi11 May '05 01:22
Read Message   RE: parameters and namespaces Herbert Sauro13 May '05 18:08
Read Message   RE: parameters and namespaces Herbert Sauro17 May '05 10:01
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