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Matt Halstead


Posts: 11
Registered:
September 2003
Re: Proposal: simple mechanism for referencing rate laws 19 Jul '05 18:52 Go to previous messageGo to previous message

Hi Mike,

On 19/07/2005, at 7:33 PM, Michael Hucka wrote:

> MH> We are very close to having a software level interface
> MH> to our current biological annotation of CellML
> MH> models. It's based on a very simple RDF schema with
> MH> relations much like OBO, and we hope to integrate it
> MH> into the CellML editor soon to help people with their
> MH> importing.
>
> Matt,
>
> Is there a description of the scheme available publicly
> somewhere?

Almost. I should have something to release on our site in a couple of
weeks. It's changing quite a bit as we look at the terms we want to
represent. The process has been to create one long flat list of
terminology that suits all the components and variables, and in some
instances the math. And now I am looking for the best way to organize
these into a controlled vocab so that more useful queries that we want
to test are simpler to write and more meaningful.

I'll let the SBML list know when this is ready and some instructions
for trying out the queries.


>
> MH
>
>

cheers
Matt


      

SubjectPosterDate
Read Message   Proposal: simple mechanism for referencing rate la... Mike Hucka17 Jun '05 18:28
Read Message   Re: Proposal: simple mechanism for referencing rat... bshapiro17 Jun '05 19:15
Read Message   Re: Proposal: simple mechanism for referencing rat... Mike Hucka29 Jun '05 08:04
Read Message   RE: Proposal: simple mechanism for referencing rat... Andrew Finney18 Jun '05 07:19
Read Message   Annoucement: TERANODE Design Suite 2.7 Available &... Zheng Li20 Jun '05 13:33
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka05 Jul '05 00:02
Read Message   RE: Proposal: simple mechanism for referencing rat... Nicolas Le Novere05 Jul '05 01:35
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka05 Jul '05 10:21
Read Message   RE: Proposal: simple mechanism for referencing rat... Nicolas Le Novere05 Jul '05 11:33
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka16 Jul '05 01:10
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard16 Jul '05 09:50
Read Message   Re: Proposal: simple mechanism for referencing rat... Matt Halstead16 Jul '05 16:59
Read Message   Re: Proposal: simple mechanism for referencing rat... Mike Hucka18 Jul '05 00:28
Read Message   Re: Proposal: simple mechanism for referencing rat... Matt Halstead18 Jul '05 01:56
Read Message   Re: Proposal: simple mechanism for referencing rat... Mike Hucka19 Jul '05 00:33
Read Message   Re: Proposal: simple mechanism for referencing rat...  Matt Halstead19 Jul '05 18:52
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka20 Jul '05 17:40
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard20 Jul '05 18:42
Read Message   Re: Proposal: simple mechanism for referencing rat... Mike Hucka20 Jul '05 20:09
Read Message   RE: Proposal: simple mechanism for referencing rat... Darren J Wilkinson21 Jul '05 01:19
Read Message   RE: Proposal: simple mechanism for referencing rat... Nicolas Le Novere21 Jul '05 07:51
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard21 Jul '05 08:09
Read Message   Re: Proposal: simple mechanism for referencing rat... Nicolas Le Novere21 Jul '05 14:13
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka21 Jul '05 19:14
Read Message   Re: Proposal: simple mechanism for referencing rat... Sven Sahle22 Jul '05 06:39
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard22 Jul '05 08:44
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard05 Jul '05 10:23
Read Message   Re: Proposal: simple mechanism for referencing rat... Nicolas Le Novere05 Jul '05 11:38
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka18 Jul '05 12:02
Read Message   Re: Proposal: simple mechanism for referencing rat... Nicolas Le Novere18 Jun '05 12:48
Read Message   RE: Proposal: simple mechanism for referencing rat... Herbert Sauro20 Jun '05 23:56
Read Message   Re: Proposal: simple mechanism for referencing rat... Howard22 Jun '05 19:14
Read Message   RE: Proposal: simple mechanism for referencing rat... Herbert Sauro21 Jul '05 13:08
Read Message   RE: Proposal: simple mechanism for referencing rat... Nicolas Le Novere21 Jul '05 14:16
Read Message   RE: Proposal: simple mechanism for referencing rat... rphair21 Jul '05 19:42
Read Message   RE: Proposal: simple mechanism for referencing ra... Nicolas Le Novere22 Jul '05 01:10
Read Message   Global vs. local parameters (was: Proposal: simple... Pedro Mendes22 Jul '05 07:01
Read Message   Re: Global vs. local parameters Nicholas Allen22 Jul '05 08:38
Read Message   RE: Proposal: simple mechanism for referencing rat... Mike Hucka22 Jul '05 15:33
Read Message   RE: Proposal: simple mechanism for referencing rat... Herbert Sauro21 Jul '05 14:32
Read Message   RE: Proposal: simple mechanism for referencing rat... Nicolas Le Novere21 Jul '05 14:43
Read Message   RE: Proposal: simple mechanism for referencing rat... Herbert Sauro21 Jul '05 14:52
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