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Howard


Posts: 102
Registered:
August 2004
Re: What do SBML libraries need to focus on next? 21 Jul '05 16:03 Go to previous messageGo to previous message


Well, since you're asking, check out http://hysss.sourceforge.net. It's
GPL'd, of course.
Though, it's not complete and we'll soon be adding yet another (very
innovative) hybrid method which utilizes a new type of probabilistic
steady state approximation.

The (slightly crude, but very capable) GUI is written in Matlab. I
obviously don't spend a lot of time on the GUI.

-Howard Salis

Herbert Sauro wrote:

>This remark is to the whole community, how many ode/gillespie wrappers
>do we really need? Are there now almost 100 listed on the sbml site?
>Instead of writing yet another sbml/ode wrapper isn't it time we
>actually did something truly innovative?
>
>Herbert Sauro
>
>-----Original Message-----
>From: Michael Hucka [mailto:mhucka@caltech.edu]
>Sent: Thursday, July 21, 2005 1:20 PM
>To: SBML Discussion List
>Cc: LibSBML Discussion List
>Subject: Re: [sbml-discuss] What do SBML libraries need to focus on
>next?
>
>
>
>>>>>>On 21 Jul 2005, Stefan Hoops <shoops@vbi.vt.edu> wrote:
>>>>>>
>>>>>>
> shoops> What I definitely exclude are the following points:
> shoops> - Computing higher-level information about a model.
> shoops> - Solvers (mentioned by Howard Salis)
>
> shoops> This can and should be provided in additional
> shoops> libraries or tools by whoever wants to
> shoops> contribute.
>
>Agreed. There is currently no plan to roll solvers into libSBML. If we
>(SBML Team) do ever work on solution engines, I forsee them being
>separate packages or libraries; it makes more sense that way.
>
>MH
>
>
>


      

SubjectPosterDate
Read Message   What do SBML libraries need to focus on next? Nicholas Allen06 Jul '05 11:46
Read Message   Re: What do SBML libraries need to focus on next? karthik06 Jul '05 20:06
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro08 Jul '05 14:13
Read Message   Re: What do SBML libraries need to focus on next? Howard08 Jul '05 16:07
Read Message   Re: What do SBML libraries need to focus on next? Mike Hucka19 Jul '05 01:17
Read Message   Re: What do SBML libraries need to focus on next? Nicholas Allen19 Jul '05 15:43
Read Message   Re: Re: What do SBML libraries need to focus on ne... Mike Hucka19 Jul '05 18:32
Read Message   Re: What do SBML libraries need to focus on next? Stefan Hoops21 Jul '05 09:17
Read Message   Re: What do SBML libraries need to focus on next? Howard21 Jul '05 09:54
Read Message   Re: What do SBML libraries need to focus on next? Mike Hucka21 Jul '05 14:18
Read Message   Re: [sbml-discuss] What do SBML libraries need to ... Mike Hucka21 Jul '05 14:19
Read Message   Re: [sbml-discuss] What do SBML libraries need to ... Stefan Hoops21 Jul '05 09:17
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro21 Jul '05 13:06
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro21 Jul '05 14:35
Read Message   RE: What do SBML libraries need to focus on next? Mike Hucka21 Jul '05 14:42
Read Message   Re: What do SBML libraries need to focus on next?  Howard21 Jul '05 16:03
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro21 Jul '05 14:48
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro21 Jul '05 17:52
Read Message   Re: What do SBML libraries need to focus on next? Howard21 Jul '05 19:19
Read Message   Re: What do SBML libraries need to focus on next? Sven Sahle22 Jul '05 05:49
Read Message   Re: What do SBML libraries need to focus on next? Howard22 Jul '05 18:11
Read Message   RE: What do SBML libraries need to focus on next? Herbert Sauro22 Jul '05 11:18
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