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Nicolas Le Novere


Posts: 469
Registered:
October 2003
RE: Event assignment semantics 03 Oct '05 15:19 Go to previous messageGo to previous message

local parameters within reactions may not have the same ID as any global
parameter. Therefore, an SBML import tool can easely write a list of all
parameters. Your solution with the prefixes gets to the same point, but
doesn't solve some other problems.

>
> I remember the discussions but not the outcome. Could you clarrify what
> you mean by using the same namespace?
>
> I'd be grateful for any useful input here.
>
> Herbert
>
> -----Original Message-----
> From: Nicolas Le Novère [mailto:lenov@ebi.ac.uk]
> Sent: Monday, October 03, 2005 2:26 PM
> To: SBML Discussion List
> Subject: Re: [sbml-discuss] Event assignment semantics
>
>
>> How does one access a local reaction parameter from an event assignment?
>>
>>
>> As far as I can tell there is no way to do this. The only solution I
>> can think of is to move all local parameters to the global space
>> (prefixed by the reaction id).
>
> Or to put all the parameters in the same namespace, suppressing the
> deadly, misleading, and generally useless, overiding. Cf. the series of
> threads "Global Vs. local parameters" we had this summer.
>
>
> --
> Nicolas LE NOVÈRE, Computational Neurobiology, EMBL-EBI, Wellcome-Trust
> Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
> Tel: +44(0)1223 494 521, Fax: +44(0)1223 494 468, Mob: +33(0)689218676
> http://www.ebi.ac.uk/~lenov
>
>
>
>


--
Nicolas LE NOVÈRE, Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223 494 521, Fax: +44(0)1223 494 468, Mob: +33(0)689218676
http://www.ebi.ac.uk/~lenov



      

SubjectPosterDate
Read Message   Event assignment semantics Herbert Sauro03 Oct '05 14:01
Read Message   Re: Event assignment semantics Nicolas Le Novere03 Oct '05 14:26
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 14:38
Read Message   RE: Event assignment semantics  Nicolas Le Novere03 Oct '05 15:19
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 15:45
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:02
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 21:39
Read Message   Re: RE: Event assignment semantics Nicholas Allen03 Oct '05 21:59
Read Message   RE: Re: RE: Event assignment semantics Herbert Sauro04 Oct '05 10:13
Read Message   RE: Re: RE: Event assignment semantics Herbert Sauro04 Oct '05 10:44
Read Message   Re: Event assignment semantics ginkel04 Oct '05 00:51
Read Message   Re: Event assignment semantics Mike Hucka04 Oct '05 17:31
Read Message   Re: RE: Event assignment semantics Jordan Atlas04 Oct '05 10:19
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:27
Read Message   RE: Event assignment semantics Herbert Sauro04 Oct '05 18:52
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