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ginkel


Posts: 46
Registered:
August 2004
Re: Event assignment semantics 04 Oct '05 00:51 Go to previous messageGo to previous message

Hi Herbert,

Herbert Sauro wrote:
> With respect to the event question I asked earlier, the problem
> appears to have a wider scope. Not only does this problem relate to
> event assignments but also rules and triggers. There are probably
> other areas too. What this means is that one cannot reference local
> parameters in any rule, event trigger or event assignment. Obviously
> this is very restrictive and make the utility of local parameters
> somewhat less. I am surprised this hasn't come up before given the
> large number of new simulators that have been written around sbml.

Well, in my writer the local parameters are only those, which are not
referenced outside the kinetic law. Otherwise they must be in the
global namespace (with appropriate name adjustment).
It is of course not only event-related, nobody asked me so far to
refer to local react params in events.
In general: there is nothing you can reference in an reaction!
Not the params and not the rate (which is useful sometimes).

CU
Martin Ginkel

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SubjectPosterDate
Read Message   Event assignment semantics Herbert Sauro03 Oct '05 14:01
Read Message   Re: Event assignment semantics Nicolas Le Novere03 Oct '05 14:26
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 14:38
Read Message   RE: Event assignment semantics Nicolas Le Novere03 Oct '05 15:19
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 15:45
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:02
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 21:39
Read Message   Re: RE: Event assignment semantics Nicholas Allen03 Oct '05 21:59
Read Message   RE: Re: RE: Event assignment semantics Herbert Sauro04 Oct '05 10:13
Read Message   RE: Re: RE: Event assignment semantics Herbert Sauro04 Oct '05 10:44
Read Message   Re: Event assignment semantics  ginkel04 Oct '05 00:51
Read Message   Re: Event assignment semantics Mike Hucka04 Oct '05 17:31
Read Message   Re: RE: Event assignment semantics Jordan Atlas04 Oct '05 10:19
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:27
Read Message   RE: Event assignment semantics Herbert Sauro04 Oct '05 18:52
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