Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » sbml-discuss » Event assignment semantics
Show: Today's Posts  :: Message Navigator
| Subscribe to topic 
Return to the default flat view Create a new topic Submit Reply
AuthorTopic
Herbert Sauro


Posts: 349
Registered:
September 2003
RE: Re: RE: Event assignment semantics 04 Oct '05 10:44 Go to previous messageGo to previous message


Agreed, I realise now it's a model editor issue. The user can decide the
status of parameters and thereby determine whether they want parameters
to be altered or not. It seems to be a non-issue.

Herbert

-----Original Message-----
From: Jordan Atlas [mailto:jca33@cornell.edu]
Sent: Tuesday, October 04, 2005 10:20 AM
To: sbml-discuss@caltech.edu
Subject: [sbml-discuss] Re: RE: Event assignment semantics


> With respect to the event question I asked earlier, the problem
> appears to have a wider scope. Not only does this problem relate to
event assignments but also rules and triggers.


Hi Herbert,

Can you explain why you would want to refer to a local parameter in
an event trigger? It seems like if a trigger depended on a parameter
then that parameter should be global.

Regarding rules/event assignments... In Section 4.7.5 of the SBML
Lvl 2 "Structures and Facilities for Model Definitions", it says
"Parameters local to a reaction cannot be changed by rules and therefore
are implicitly always constant..." While it doesn't explicitly mention
event assignments it says that all local parameters are constant, so it
seems that changing them with event assignments would be disallowed.

Thanks,
--Jordan Atlas


      

SubjectPosterDate
Read Message   Event assignment semantics Herbert Sauro03 Oct '05 14:01
Read Message   Re: Event assignment semantics Nicolas Le Novere03 Oct '05 14:26
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 14:38
Read Message   RE: Event assignment semantics Nicolas Le Novere03 Oct '05 15:19
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 15:45
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:02
Read Message   RE: Event assignment semantics Herbert Sauro03 Oct '05 21:39
Read Message   Re: RE: Event assignment semantics Nicholas Allen03 Oct '05 21:59
Read Message   RE: Re: RE: Event assignment semantics Herbert Sauro04 Oct '05 10:13
Read Message   RE: Re: RE: Event assignment semantics  Herbert Sauro04 Oct '05 10:44
Read Message   Re: Event assignment semantics ginkel04 Oct '05 00:51
Read Message   Re: Event assignment semantics Mike Hucka04 Oct '05 17:31
Read Message   Re: RE: Event assignment semantics Jordan Atlas04 Oct '05 10:19
Read Message   RE: Event assignment semantics Mike Hucka04 Oct '05 17:27
Read Message   RE: Event assignment semantics Herbert Sauro04 Oct '05 18:52
Previous Topic:containers structure changing in time?
Next Topic:Dimensionless Units
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.