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> Since the rate Law is a function of PyrI, PyrM, HM, HI and E
> [rate-Law(PyrI, HM, PyrM, HI, E)],which of the followings would be the
> right way to wirte a SBML?
> kineticLaw = rate-Law(PyrI, HM, PyrM, HI, E)*VM -- (1)
> kineticLaw = rate-Law(PyrI*CF, HM, PyrM, HI*CF, E)*VM -- (2)

Forget SBML for a minute. What is your famous rate-law that relate the
concentrations of reactants on different compartment?

--
Nicolas LE NOVÈRE, Computational Neurobiology,
EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Tel: +44(0)1223 494 521, Fax: +44(0)1223 494 468, Mob: +33(0)689218676
http://www.ebi.ac.uk/~lenov