Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » sbml-discuss » SBML L2v2 specification vote #4: References to controlled vocabularies
Show: Today's Posts  :: Message Navigator
| Subscribe to topic 
Return to the default flat view Create a new topic Submit Reply
AuthorTopic
Ben Bornstein


Posts: 287
Registered:
September 2003
Re: SBML L2v2 specification vote #4: References to controlled vocabularies 21 Dec '05 09:25 Go to previous messageGo to previous message

Hi All,

While thinking aloud to Andrew and Nick at the SBML Forum, I suggested
putting the sboTerm attribute in its own XML namespace. Upon further
reflection, I see no benefits to doing so, only drawbacks. First, it
is uncommon for XML namespaces to apply to attributes at all.
Technically, unless explicitly declared, XML attributes do not belong
to any XML namespace (this makes survey option 2a incorrect). Second,
since some XML technologies are flawed when it comes to namespace
processing (e.g. XPath), putting sboTerm in its own namespace could
cause problems.

Thanks.

Ben


On Dec 20, 2005, at 7:50 PM, Michael Hucka wrote:

> An argument for (b) might that taking the sboTerm attribute
> out of the SBML namespace would encapsulate the things
> dealing with SBO, which perhaps is conceptually cleaner.

      

SubjectPosterDate
Read Message   SBML L2v2 specification vote #4: References to con... Mike Hucka13 Dec '05 14:21
Read Message   Re: SBML L2v2 specification vote #4: References t... Ralph.Gauges15 Dec '05 06:57
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence15 Dec '05 10:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges16 Dec '05 00:27
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere16 Dec '05 10:11
Read Message   Re: SBML L2v2 specification vote #4: References to... Sven Sahle19 Dec '05 04:53
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence16 Dec '05 10:56
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard16 Dec '05 11:43
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence19 Dec '05 04:00
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard19 Dec '05 09:19
Read Message   Re: SBML L2v2 specification vote #4: References to... Martin Ginkel21 Dec '05 12:26
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 15:30
Read Message   Re: SBML L2v2 specification vote #4: References t... Nicolas Le Novere16 Dec '05 01:27
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 11:31
Read Message   Re: SBML L2v2 specification vote #4: References t... Nicolas Le Novere20 Dec '05 16:05
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 19:42
Read Message   Re: SBML L2v2 specification vote #4: References t... bshapiro15 Dec '05 12:15
Read Message   Re: SBML L2v2 specification vote #4: References t... Mike Hucka20 Dec '05 19:50
Read Message   Re: SBML L2v2 specification vote #4: References t...  Ben Bornstein21 Dec '05 09:25
Read Message   RE: SBML L2v2 specification vote #4: References to... Ralph.Gauges17 Dec '05 09:11
Read Message   RE: SBML L2v2 specification vote #4: References to... Nicolas Le Novere19 Dec '05 08:52
Read Message   RE: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 15:11
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges21 Dec '05 02:04
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 23:33
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere03 Jan '06 00:21
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 15:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 03:08
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere06 Jan '06 10:37
Read Message   Re: SBML L2v2 specification vote #4: References to... Martin Ginkel05 Jan '06 01:44
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere03 Jan '06 00:50
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence05 Jan '06 05:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere05 Jan '06 11:01
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence06 Jan '06 02:48
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere06 Jan '06 10:32
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence03 Jan '06 04:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 20:55
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro03 Jan '06 12:52
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops03 Jan '06 14:16
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 15:39
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 03:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops04 Jan '06 09:46
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 14:24
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere04 Jan '06 02:55
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard19 Dec '05 09:22
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges20 Dec '05 01:48
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard20 Dec '05 11:13
Read Message   RE: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 19:56
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro20 Dec '05 20:18
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka20 Dec '05 23:55
Read Message   Re: SBML L2v2 specification vote #4: References to... hugh.d.spence21 Dec '05 02:18
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka21 Dec '05 05:48
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro21 Dec '05 11:35
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 15:44
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 07:30
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 09:22
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 10:12
Read Message   Re: SBML L2v2 specification vote #4: References to... Pedro Mendes22 Dec '05 10:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 11:18
Read Message   Re: SBML L2v2 specification vote #4: References to... zucker22 Dec '05 11:54
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 12:13
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges23 Dec '05 01:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 20:49
Read Message   Partial compliance [was] SBML L2v2 specification ... Nicolas Le Novere03 Jan '06 00:08
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro22 Dec '05 12:05
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard22 Dec '05 12:21
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka23 Dec '05 09:07
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard23 Dec '05 10:07
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere22 Dec '05 05:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 08:25
Read Message   Re: SBML L2v2 specification vote #4: References to... Nicolas Le Novere22 Dec '05 10:19
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 10:31
Read Message   Re: SBML L2v2 specification vote #4: References to... bshapiro22 Dec '05 10:58
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka22 Dec '05 12:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Darren J Wilkinson23 Dec '05 12:12
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka23 Dec '05 15:46
Read Message   Re: SBML L2v2 specification vote #4: References to... Hiroyuki Kuwahara24 Dec '05 22:01
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka03 Jan '06 00:33
Read Message   Re: SBML L2v2 specification vote #4: References to... Hiroyuki Kuwahara04 Jan '06 10:27
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka04 Jan '06 11:49
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 22:23
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka02 Jan '06 20:20
Read Message   Re: SBML L2v2 specification vote #4: References to... Howard21 Dec '05 10:29
Read Message   Re: SBML L2v2 specification vote #4: References to... Sven Sahle22 Dec '05 01:56
Read Message   RE: SBML L2v2 specification vote #4: References to... Nicolas Le Novere21 Dec '05 10:08
Read Message   RE: SBML L2v2 specification vote #4: References to... zucker21 Dec '05 11:02
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges22 Dec '05 02:53
Read Message   Re: SBML L2v2 specification vote #4: References to... Ralph.Gauges22 Dec '05 02:57
Read Message   Re: SBML L2v2 specification vote #4: References to... Stefan Hoops22 Dec '05 08:10
Read Message   RE: SBML L2v2 specification vote #4: References to... Herbert Sauro22 Dec '05 13:08
Read Message   Re: SBML L2v2 specification vote #4: References to... zucker23 Dec '05 22:28
Read Message   Re: SBML L2v2 specification vote #4: References to... Mike Hucka26 Dec '05 09:11
Read Message   Results of SBML L2v2 specification survey vote #4 Mike Hucka04 Jan '06 23:37
Previous Topic:voting process
Next Topic:Voting status & upcoming deadlines
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.