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SBML Discussions » sbml-discuss » SBML L2v2 specification vote #7: Making 'math' optional in KineticLaw
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Mike Hucka


Posts: 961
Registered:
October 2003
RE: SBML L2v2 specification vote #7: Making 'math'optional in KineticLaw 25 Jan '06 18:18 Go to previous messageGo to previous message

tg> Dear all, I thought the purpose of SBML was to develop
tg> a framework which could accept very different models.
tg>
tg> SBML is absolutely excellent for representing simple
tg> and genome-scale metabolic models. Flux balance
tg> analysis is just ONE simple way to analyse these
tg> models. I simply do not understand why these models
tg> should not be permitted. Kinetics can be added
tg> afterwards. Good models are not developed by one
tg> person overnight. We add 'math' when we know the math!

Yes to the above.

To clarify something: there is no permission issue as far as
representing such models in SBML is concerned, since you are
free to have models without kinetic laws.

MH

      

SubjectPosterDate
Read Message   SBML L2v2 specification vote #7: Making 'math' opt... Mike Hucka13 Jan '06 16:15
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops16 Jan '06 09:06
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Nicolas Le Novere16 Jan '06 11:57
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops17 Jan '06 06:29
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Nicolas Le Novere17 Jan '06 09:04
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops18 Jan '06 07:21
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Nicolas Le Novere18 Jan '06 13:22
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops19 Jan '06 07:03
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Darren J Wilkinson19 Jan '06 13:28
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Henning Schmidt18 Jan '06 00:28
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Mike Hucka26 Jan '06 21:02
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops27 Jan '06 04:58
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Mike Hucka27 Jan '06 17:19
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Stefan Hoops30 Jan '06 05:18
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Mike Hucka30 Jan '06 13:49
Read Message   Re: SBML L2v2 specification vote #7: Making 'math... Mike Hucka18 Jan '06 22:47
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Herbert Sauro23 Jan '06 15:35
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... tg23 Jan '06 16:05
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'...  Mike Hucka25 Jan '06 18:18
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... jrohwer24 Jan '06 00:07
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Nicolas Le Novere24 Jan '06 01:07
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Pedro Mendes24 Jan '06 05:59
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Mike Hucka25 Jan '06 18:01
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Herbert Sauro24 Jan '06 12:34
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Pedro Mendes24 Jan '06 13:14
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Herbert Sauro24 Jan '06 17:28
Read Message   Re: SBML L2v2 specification vote #7: Making 'math'... Pedro Mendes24 Jan '06 18:27
Read Message   RE: SBML L2v2 specification vote #7: Making 'math'... Herbert Sauro25 Jan '06 10:54
Read Message   Results of L2v2 specification vote #7 Mike Hucka30 Jan '06 13:48
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